Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04989 ATGGAGAGAGAATTTGAAAGAGGTTACATAAAAAAAGGACCATGGAGTAGTGAAGAAGATGAAGTGTTGCTGAAACATGTTAACAAGTATGGTCCAAGGGATTGGAGCTCCATTCGATCCAAAGGTTCTTTGCCGAGGACGGGAAAATCTTGTCGGTTGAGATGGGTTAACAAGCTTAGACCAAACTTGAAAACAGGGTGCAAGTTTTCAGCAGAGGAGGAAAGGGTGGTGATTGAATTACAGGAGCAATTTGGAAACAAATGGGCGAAAATCGCTATGTATTTGGAAGGCAGAACAGACAATGATGTGAAGAACTTTTGGAGTAGCAGGAGAAAAAGGATGGAGAGGTCATCTCCAAGGACACCATCACCACCACCAAAGCAGCAGAAAAACAAAGGAAAAGATGTTGTTAATAATCAAGTGAAAGTTGAAAAGGTTCCTGAATGTGGTTCTAATCAGCTAGAGGAAAACTTTACTTACCCTACTTCTTGTATGGGAAACAAAGAGGTGTTCAAGATGGTGAATCTACCGGATTTGACAAAGCCAAACTACCAAAATATGGAAAATGACATTAATGGAATTGAGTTTGAGGCTACTCCACTTCACACGGTAATGTCATTTGAGTCTTCGTCAGCGGCGTACGACATTCCTCTAATCCCAGAACCACATATGGACTTTCCGCTATTTCCCGAGTGTCAGGATCTTGTTCAAGAGCCATATGATCCTAATTTTATGGACATGTTTGAGCAGAAAAAATGTTCAGATTGTGTGTGGAGCCAGAAGCTTGGGACCAGGTTGCCAACCCTTGAAGGAAATTCTCAGAGTACAAGTTCAAATGGCTTGTTTCAGGACATCTCAACTGAGATTTTTGAATACTTTTCTTAG 885 0.4113 MEREFERGYIKKGPWSSEEDEVLLKHVNKYGPRDWSSIRSKGSLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEERVVIELQEQFGNKWAKIAMYLEGRTDNDVKNFWSSRRKRMERSSPRTPSPPPKQQKNKGKDVVNNQVKVEKVPECGSNQLEENFTYPTSCMGNKEVFKMVNLPDLTKPNYQNMENDINGIEFEATPLHTVMSFESSSAAYDIPLIPEPHMDFPLFPECQDLVQEPYDPNFMDMFEQKKCSDCVWSQKLGTRLPTLEGNSQSTSSNGLFQDISTEIFEYFS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04989 294 SMART sant 11 61 IPR001005 -
Vifa2g04989 294 SMART sant 65 113 IPR001005 -
Vifa2g04989 294 Gene3D - 11 64 - -
Vifa2g04989 294 FunFam Transcription factor GAMYB 67 137 - -
Vifa2g04989 294 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Vifa2g04989 294 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vifa2g04989 294 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Vifa2g04989 294 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Vifa2g04989 294 FunFam MYB transcription factor 12 64 - -
Vifa2g04989 294 MobiDBLite consensus disorder prediction 110 138 - -
Vifa2g04989 294 Gene3D - 67 142 - -
Vifa2g04989 294 CDD SANT 14 59 IPR001005 -
Vifa2g04989 294 CDD SANT 68 107 IPR001005 -
Vifa2g04989 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Vifa2g04989 294 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Vifa2g04989 294 PANTHER TRANSCRIPTION FACTOR DUO1 5 293 - -
Vifa2g04989 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04989 Vifa-Chr2 1480526630 1480528359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04989 10 116 MYB Transcription Factor Family AT3G60460 82.243 1.12e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g04989 Myb_DNA-binding 7.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04989 K09422 - gmx:100793689 412.149