Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04968 ATGTCGCTCAACATGAAAACCCTAACCCAAGCACTAGCAAAAACCGCAGCAGTAATCGAGAAAAAGGTGCAAACAACGGTGCAAGAGGTAACAGGTCCAAAGCCACTTCAAGACTACGAGCTTCTCGACCAGATCGGTTCCGCTGGACCGGGTTTAGCTTGGCGGCTTTACTCCGCCCGGGCTCGGGATCCGTCGCGGCAGCATCAGTATCCTGTTGTGTGCGTTTGGGTGTTGGATAAACGGGCGTTGTCGGAGGCGAGAATGCGCGCGGGGTTGACGAAAGCGGCCGAGGATTCGTTTTTGGATTTGATTCGGACGGATGCGGGGAAGCTTGTTAGGCTTAGGCATCCTGGAGTTGTGCATGTTGTTCAGGGACTTGATGAGAGTAAGAACGCCATGGCGATGGTGACCGAGCCTTTGTTTGCTTCTGTTGCCAATACGCTTGGGAATCTTGATAATGTTGCAAATGTTCCTAAGGATCTTAGGGGAATGGAAATGGGATTGTTGGAGGTGAAGCATGGTTTACTTCAGATGGCGGAATCGTTGGATTTTCTCCATAACCAGGCTCATCTTATTCATCGAGCTATATCTCCTGAGAATGTTTTTATCACAATGAGTGGAGCCTGGAAACTTGGTGGATTTGGTTTTGCAATTCCTGCTTCGCAGAATGCTGGCGAGTTATCTAATCAGCAAGCCTTCCATTATGCTGAATATGACGTTGAAGACTCTATTTTGCCACTTCAGCCATCAATTAATTACACTGCTCCTGAGATGGTGAGGAGCACTGCTTCTTCAGCTGGGTGCTATTCTGATATTTTCAGTTTTGGATGCCTTGCCTACCATTTGATTGCTCGCAAGCCTTTGTTTGACTGCCACAACAATGTGAAGATGTACATGAATACCTTGACTTACTTATCCAGTGATGCTTTCTCATCTATCCCATCGGAACTGGTTCCTGACTTGCAAAGGATGCTCTCTTCAAATGAATCTTACAGGCCAAGTGCGATGGATTTTACAGGTAAATAA 1026 0.4708 MSLNMKTLTQALAKTAAVIEKKVQTTVQEVTGPKPLQDYELLDQIGSAGPGLAWRLYSARARDPSRQHQYPVVCVWVLDKRALSEARMRAGLTKAAEDSFLDLIRTDAGKLVRLRHPGVVHVVQGLDESKNAMAMVTEPLFASVANTLGNLDNVANVPKDLRGMEMGLLEVKHGLLQMAESLDFLHNQAHLIHRAISPENVFITMSGAWKLGGFGFAIPASQNAGELSNQQAFHYAEYDVEDSILPLQPSINYTAPEMVRSTASSAGCYSDIFSFGCLAYHLIARKPLFDCHNNVKMYMNTLTYLSSDAFSSIPSELVPDLQRMLSSNESYRPSAMDFTGK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04968 341 SUPERFAMILY Protein kinase-like (PK-like) 34 338 IPR011009 -
Vifa2g04968 341 Gene3D Phosphorylase Kinase; domain 1 37 138 - -
Vifa2g04968 341 CDD PK_SCY1_like 45 339 - -
Vifa2g04968 341 SMART serkin_6 39 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04968 341 Pfam Protein kinase domain 107 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04968 341 Gene3D Transferase(Phosphotransferase) domain 1 162 341 - -
Vifa2g04968 341 ProSiteProfiles Protein kinase domain profile. 39 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04968 341 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 36 340 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04968 92 335 AGC Kinase Gene Family AT3G10540 22.672 1.99e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Vifa2g04968 Pkinase 8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04968 K17541 - gmx:100788400 606.29