Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04966 ATGACTCGTTCTGAAACCAAGCTGCTGCTGCAGCTATTCAATTATGCAAATCACACTTCAAAATCAATGAAGTCAGGTGTTATTGACGACGCATTAGGGTTTCTTAATGCAGTAAAAGTTGCATTTCAAAATAACATGCAAAAGTATGATCAGTTTTTAAAAGTCCTAAGAGATTTCAGTGCTAAAAGAATTTATATAAGTCGTGTCAAATCAAAATTGAAGATGTTGTTTAAAGGGCATAAATCTTTAATTCTGGAATTCAACTCTTTCGTGCCCAAGAAACATCAAATCAAACTACTTTCATTAGATAATGGTGAACTTGCTCAACTTCCTTGGGATGTGCTTGATATCATTTGCGAAAAACTAGATTTTCACGACCTCTTTTCGTTTCCTGGTGTTTGCAAGAACTGGTGGACTTTCCATAAATCAAATTTCTTGTCATCCCAAGAACCATTGCTTGTTCGTTTCACTGGTTATCATACCCACTCATATTCCTTTATTAGCATACACAATAAAAAAGTTTATGATTTGAACATGATGAATTGCTTCCAGCAACCCAAATGTGTCTATGTTGGAGTTTCCAGCGGATTTTTCATCTTCGCCCGTGAAAATAATTCATTTGTGCTATTCAATCCATTTACAAGAAAAGAATTGGTAATCCATGCTACTTTTACGGTTAATCATATCACAATTTATCAGTACCAAGCCTTGCTTGCTTTTGAGAAATGCTCCGAGGAATATGTCTTGCTTCTTTTATGCAAAGAGTCTAGCCGTTTGTATGCCTATCAATCTCGATACTCTCGTTGGTGTATTTATTCAACATTAAAACCGGAGGAGGTGATATTTCCCTCTTGGACTGACGTTTTGGCATGGACGCAGTCTGTTGGTAAACAACATGGTATTATTGTTGTTATTGTTTGTTCAGATACCACAAATGGGATGAGAGGGAGGAAATATAGATTGATTATGGGTTGTGAAATTGGAGGAAATTATAAGAAGAAGGATGTGATTGTAACAAGTTATACTATGAAAGTGAAATATCCAATTATGCTAATATCTGTGCCAAGTGGAAGCGGTTGGAAAGTTATAGTTAAGTGTGAGTTTCATAATCATGTACTAGTTAAGAACATAGAAGAGGATGGTGTATTAGGTCGTTTAAAAGATTCTGAAAGAAAAATTGTGAATGACATGACCAAATACAATATGGCTCCATGA 1215 0.3531 MTRSETKLLLQLFNYANHTSKSMKSGVIDDALGFLNAVKVAFQNNMQKYDQFLKVLRDFSAKRIYISRVKSKLKMLFKGHKSLILEFNSFVPKKHQIKLLSLDNGELAQLPWDVLDIICEKLDFHDLFSFPGVCKNWWTFHKSNFLSSQEPLLVRFTGYHTHSYSFISIHNKKVYDLNMMNCFQQPKCVYVGVSSGFFIFARENNSFVLFNPFTRKELVIHATFTVNHITIYQYQALLAFEKCSEEYVLLLLCKESSRLYAYQSRYSRWCIYSTLKPEEVIFPSWTDVLAWTQSVGKQHGIIVVIVCSDTTNGMRGRKYRLIMGCEIGGNYKKKDVIVTSYTMKVKYPIMLISVPSGSGWKVIVKCEFHNHVLVKNIEEDGVLGRLKDSERKIVNDMTKYNMAP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04966 404 ProSiteProfiles PAH domain profile. 23 94 IPR003822 GO:0006355
Vifa2g04966 404 PANTHER OS09G0392200 PROTEIN 94 273 IPR044619 -
Vifa2g04966 404 Pfam F-box domain 108 137 IPR001810 GO:0005515
Vifa2g04966 404 Pfam Paired amphipathic helix repeat 47 90 IPR003822 GO:0006355
Vifa2g04966 404 CDD F-box_SF 108 137 - -
Vifa2g04966 404 ProSiteProfiles F-box domain profile. 104 137 IPR001810 GO:0005515
Vifa2g04966 404 FunFam Paired amphipathic helix protein Sin3 30 92 - -
Vifa2g04966 404 SUPERFAMILY PAH2 domain 28 93 IPR036600 GO:0006355
Vifa2g04966 404 SUPERFAMILY F-box domain 105 147 IPR036047 GO:0005515
Vifa2g04966 404 Gene3D Paired amphipathic helix 30 92 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04966 Vifa-Chr2 1473654634 1473658719 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04966 22 118 WRKY Transcription Factor Family AT4G12020 40.206 1.02e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g04966 PAH 7.4e-11 No_clan