Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04956 ATGACTCGTTCTGAAACCAAGCTGCTGCTGCAGCTATTCAATTATGCAAATCACACTTCAAAATCAATGAAGTCAGGTGTTATTGACGACGCATTAGGGTTTCTTAATGCAGTAAAAGTTGCATTTCAAAATAACATGCAAAAGTATGATCAGTTTTTAAAAGTCCTAAGAGATTTCAGTGCTAAAAGAATTTATATAAGTCGTGTCAAATCAAAATTGAAGATGTTGTTTAAAGGGCATAAATCTTTAATTCTGGAATTCAACTCTTTCGTGCCCAAGAAACATCAAATCAAACTACTTTCATTAGATAATGGTGAACTTGCTCAACTTCCTTGGGATGTGCTTGATATCATTTGCGAAAAACTAGATTTTCACGACCTCTTTTCGTTTCCTGGTGTTTGCAAGAACTGGTGGACTTTCCATAAATCAAATTTCTTGTCATCCCAAGAACCATTGCTTGTTCGTTTCACTGGTTATCATACCCACTCATATTCCTTTATTAGCATACACAATAAAAAAGTTTATGATTTGAACATGATGAATTGCTTCCAGCAACCCAAATGTGTCTATGTTGGAGTTTCCAGCGGATTTTTCATCTTCGCCCGTGAAAATAATTCATTTCTGCTATTCAATCCATTTACAAGAAAAGAATTGGTAATCCATGCTACTTTTACGGTTAATCATATCACAATTTATCAGTACCAAGCCTTGCTTGCTTTTGAGAAATGCTCCCAGGAATATGTCTTGCTTCTTTTATGCAAAGAGTCTAGCCGTTTGTATGCCTATCAATCTCGATACTCTCGTTGGTGTATTTATTCAACATTAAAACCGGAGGAGGTGGTAGTTGACTTTGTGGTTTTGAACAATATAATATATGTTGTCACTAACAATGCCAACATAGGGGTACTAAACTTGAATTCTCGAAATATTAAATTTCTAAACCTCAAGAATACTCCCGACAAACTTCCCTCAAAAACATCCTTTAATTTGGCTAATTGTGATGACCAACTTCTACTGATTCATTTACAATTGTACTCAAGAAGGCAAGTTTACAAGATAGACCTGTCAACCATGAATTATGTTAAGATGAAAAGTTTGGGTGACATTGCATTGTTTTATGTTTCTCGTAAAAACTGTCGGGCATTGAGCAATCCTCAGAGATTTGGGTATCGGAGCAATTACGTGTATGAAGTAAATTCTTTTTCCAAATGTGGTATGTATGATTGGAACGATCATAGATTAAGTTATTATAAGCATTCTGCTGGAGACTTCAATTTTGATTGGTGTTTTAGACATTTTGTATGTCAAGGTTCTGTTAGAAGCGACTTCAATTTATTTGATTGGTGTTTTACACATTTAAAATATCAAGTTGATTATTCTTTAGTTGAATAA 1392 0.3434 MTRSETKLLLQLFNYANHTSKSMKSGVIDDALGFLNAVKVAFQNNMQKYDQFLKVLRDFSAKRIYISRVKSKLKMLFKGHKSLILEFNSFVPKKHQIKLLSLDNGELAQLPWDVLDIICEKLDFHDLFSFPGVCKNWWTFHKSNFLSSQEPLLVRFTGYHTHSYSFISIHNKKVYDLNMMNCFQQPKCVYVGVSSGFFIFARENNSFLLFNPFTRKELVIHATFTVNHITIYQYQALLAFEKCSQEYVLLLLCKESSRLYAYQSRYSRWCIYSTLKPEEVVVDFVVLNNIIYVVTNNANIGVLNLNSRNIKFLNLKNTPDKLPSKTSFNLANCDDQLLLIHLQLYSRRQVYKIDLSTMNYVKMKSLGDIALFYVSRKNCRALSNPQRFGYRSNYVYEVNSFSKCGMYDWNDHRLSYYKHSAGDFNFDWCFRHFVCQGSVRSDFNLFDWCFTHLKYQVDYSLVE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04956 463 Pfam F-box domain 108 137 IPR001810 GO:0005515
Vifa2g04956 463 Pfam Paired amphipathic helix repeat 47 90 IPR003822 GO:0006355
Vifa2g04956 463 ProSiteProfiles PAH domain profile. 23 94 IPR003822 GO:0006355
Vifa2g04956 463 PANTHER OS09G0392200 PROTEIN 81 432 IPR044619 -
Vifa2g04956 463 FunFam Paired amphipathic helix protein Sin3 30 92 - -
Vifa2g04956 463 CDD F-box_SF 108 137 - -
Vifa2g04956 463 ProSiteProfiles F-box domain profile. 104 137 IPR001810 GO:0005515
Vifa2g04956 463 SUPERFAMILY F-box domain 106 147 IPR036047 GO:0005515
Vifa2g04956 463 SUPERFAMILY PAH2 domain 28 93 IPR036600 GO:0006355
Vifa2g04956 463 Gene3D Paired amphipathic helix 30 92 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04956 Vifa-Chr2 1471829191 1471830793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04956 23 118 WRKY Transcription Factor Family AT4G12020 40.625 3.16e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g04956 PAH 8.8e-11 No_clan