Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04951 ATGGGAAAGGCAAGTAAATGGATTAGAAACCTTCTTCTAGGGAAAAAAGAAGAGAACTTCAAGCAGATTGATACTTTCTGCTCGGAGAAAAAGACCGCAAACGCGGTTAAAAGTAGTAGCAGTAGTAATAAAATGGTAGTGAAGCGAAAATGGAGCTTTCGAAAACTAACAGGTGGAAGATCAACAGGAAGGATAGTAGCGCATAAAGTTTCCAAGTCTTTTGACTCGATTGATTCTCCGAAATTGCAAATTCAAGCTTTGATGTTCCAAACTCAGACTCCAAGAACAGCTGCTGAGTTTGTAAAAAGAGCTGCTACAAGGATTCAAGCTTCCTTTCGCTCCTATTTGGCAAGGAGAGCACTGCATGCTTTAAGAGGATTGGTGAAGTTACAAGCACTAGTGAGAGGTCATCTTGTAAGGAAACAAACAACTGCAACACTGCGAGGGATGCACGCATTGATGTCTATTCAAGTTAGAGCTCGAATCAAAAGGATTAAGATGGCAGAAGAAGAAAATCCACTCGAAATACAACCTCCCCAACATACAGAAATTCCTGATTTCAAACCTCACAAGACACAACAAAGACAAAATCAAGATTCGAAGAATATGAGTGTGGAAGAAATGTTGGGAGTAATGAGGAGTAGAAGTGGCCCTTTAGATGTAAAAAGCAGAAAGTATGATTCAATGGCATATTATTCAAATCATTTGAAGAAAGAGAATAATCATAATAATACTAGAAAAATCATCACAGAACCAAGCAGTCCAGAAAAATACTTCAAAGAAATGATCGATTATTTGAAGCCGACAACATCTCAGCGTGACATGGTACCTCCTAGACAATCATGGTCATCGCCGAATTACATGAACAAGACAGAATCGTCAAAGGCGAAAACAAGGTCTAGTAGTGAACCAAGACAAAGACCAAAACTAGGAACAAAGCAAAAAAGTAGTAAGAGTGTTGAAGGTGGTTTGTTGAAGCAAAATATGTTGTCACATTCAGCAAGGTATGATCATTGGGTTGTTAATTCAATGAAGGAGAGTAAACGTGATTCTTTTGATAGCTGCAGGGTTACTACTAGTGATGATTCCTACTACATGTGA 1101 0.386 MGKASKWIRNLLLGKKEENFKQIDTFCSEKKTANAVKSSSSSNKMVVKRKWSFRKLTGGRSTGRIVAHKVSKSFDSIDSPKLQIQALMFQTQTPRTAAEFVKRAATRIQASFRSYLARRALHALRGLVKLQALVRGHLVRKQTTATLRGMHALMSIQVRARIKRIKMAEEENPLEIQPPQHTEIPDFKPHKTQQRQNQDSKNMSVEEMLGVMRSRSGPLDVKSRKYDSMAYYSNHLKKENNHNNTRKIITEPSSPEKYFKEMIDYLKPTTSQRDMVPPRQSWSSPNYMNKTESSKAKTRSSSEPRQRPKLGTKQKSSKSVEGGLLKQNMLSHSARYDHWVVNSMKESKRDSFDSCRVTTSDDSYYM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04951 366 ProSiteProfiles IQ motif profile. 102 129 IPR000048 GO:0005515
Vifa2g04951 366 Pfam IQ calmodulin-binding motif 128 142 IPR000048 GO:0005515
Vifa2g04951 366 Pfam IQ calmodulin-binding motif 103 121 IPR000048 GO:0005515
Vifa2g04951 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 143 IPR027417 -
Vifa2g04951 366 Gene3D - 98 153 - -
Vifa2g04951 366 ProSiteProfiles IQ motif profile. 125 152 IPR000048 GO:0005515
Vifa2g04951 366 MobiDBLite consensus disorder prediction 170 202 - -
Vifa2g04951 366 PANTHER IQ-DOMAIN 5-RELATED 1 321 - -
Vifa2g04951 366 MobiDBLite consensus disorder prediction 296 310 - -
Vifa2g04951 366 MobiDBLite consensus disorder prediction 273 295 - -
Vifa2g04951 366 MobiDBLite consensus disorder prediction 269 323 - -
Vifa2g04951 366 Pfam Protein of unknown function (DUF4005) 255 342 IPR025064 -
Vifa2g04951 366 SMART iq_5 100 122 IPR000048 GO:0005515
Vifa2g04951 366 SMART iq_5 123 144 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04951 Vifa-Chr2 1470483591 1470484989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04951 1 308 IQD Protein Family AT4G14750 36.364 1.60e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04951 - - psat:127129486 626.706