Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04950 ATGGAATCCTGCAATTGTGTGGAGCCACAATGGCCAGCTGATGATTTATTGATGAAGTACCAATATATCTCCGATTTCTTCATTGCCCTTGCTTACTTCTCAATCCCACTCGAGCTTATCTACTTTGTTAAGAAATCGGCGGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCCTTCATAGTTCTATGTGGAGCTACACATCTAATCAATTTATGGACATTTACAATTCATACAAGAACCGTGGCGATTGTAATGGCCACCGCTAAGCTTTTAACTGCTGCGGTATCATGCGCCACTGCACTTATGCTTGTACATATTATTCCCGATCTATTGAGCGTTAAAACTAGAGAGTTATTTTTGAAGAAAAAGGCTGCAGATCTTGATAGAGAAATGGGTATGATTCGTACGCAGGAAGAAACCGGTCGACATGTTAGGATGTTGACTCATGAGATCAGAAGTACTCTTGATAGACATACAATACTGAAGACAACACTTGTTGAACTCGGTAGAACTCTTGGACTAGAGGAATGTGCGTTATGGATGCCGACACGTACTGGGTTGGAGCTTCAACTCTCTTACACATTGCGACAGCAGAACCCTGTTGGATATACAGTACCTATTAATCTTCCTGTGATTAACCAAGTATTTAGTAGCAACCGTGCAGTTAAAATTTCATCGAATGTTCCAGTTGCTAGATTACGGCCCCATGCTGCAAAATACATGCCTGGGGCCGTAGTTGCTATTCGGGTGCCTCTCTTAAATCTTTCTAATTTTCAAATATATGATTGGCCCGAAGTTTCAACTAGAAGCTATGCTTTGATGGTTTTGATGCTTCCATCTGATAGTGCTAGACAGTGGCATGTACATGAGTTAGAGCTCGTTGAGGTAGTTGCTGATCAGGTAGCTGTTGCGCTTTCGCATGCTGCAATTTTAGAAGAGTCAATGAGGGCAAGGGATCAGCTTATGGAGCAGAATGTTGCACTTGATATGGCTAGAAGAGAAGCAGAAACTGCAATTCATGCTCGCAATGACTTTTTGGCTGTTATGAATCACGAGATGAGAACTCCGATGCATGCAATTATTGCACTCTCTTCATTGTTACAGGAAACAGATATGACTGCCGAGCAGCGTCTGATGGTGGAAACAATATTGAAAAGCAGCAATCTATTGGCTACGCTCATCAACGATGTTTTAGATCTTTCACGGCTCGAAGATGGCAGTTTTCAGCTTGACACAGCAAATTTTAACCTTCATTCAATGTTTAGAGAGGTCCTTAACTTGATTAAACCTGTTGCGTGTGTTAAAAAGCTGTCACTCACTTTACATTTCGCATCAGATTTGCCGGTGTATGCAATTGGTGACGAAAAACGTCTCATGCAAACTCTTCTCAATGTTGTTGGTAATGCTGTTAAGTTCTCAAAAGAAGGAAGCATTTCAATCACCGCATTTGTTGCAAAGCCTGAATCCTTCAGGGATATTAGGTTTCCTGATTTCATACCAGTGCCAAGTGATGGTCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAGTCAATCCACAAGATATCCCGAAGCTATTCACTAAGTTTGCACAAAACCAATTAGCGACAAGAAATCCCGTTGGAAATGGGCTTGGCCTTGCAATTTGCAGAAGGTTTGTGAATCTCATGGAAGGCCATATTTGGATCGAAAGCGAGGGTATTGGTAAAGGATGTACAGCCTCTTTTATTGTAAAACTCAGAATCCCGGACAGATCAAATGAATTTAAGCTACCTTACATGCCTAAAGCTCTTGTAAATCATGGATCTACAAGCATTGCCGGTCTCAAAATTCTCGTCATGGATGATAATGGGGTGAGCAGGTCAGCCACAAAGGGGCTTCTTATGCATTTAGGATGCGACGTCACAACTATAGGCTCGAGCGAAGAATGTCTGCGTGTTGTTTCGCAGGAACACAAAGTGGTCTTCATGGATATTTGTACAGGGTTAGATGGTTATGAATTAGCAGTTCGTATCCAAGAGAAATTCGCAAATCGTCAAGATAGACCACTTATAGTTGCTCTCACCGGAAACACCAACAAGTGGACTCAAGAAAACTGTACGAGAGCTGGTGTGAATGGCCTTGTTTTGAAACCTGTTTCTGTTGAGAAGATGAAGAGTGTTTTAACAGAGCTCTTGGAACGGCGATTTGTGTTTGAAACAGTTTAA 2220 0.4171 MESCNCVEPQWPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMATAKLLTAAVSCATALMLVHIIPDLLSVKTRELFLKKKAADLDREMGMIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELQLSYTLRQQNPVGYTVPINLPVINQVFSSNRAVKISSNVPVARLRPHAAKYMPGAVVAIRVPLLNLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDMARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLLQETDMTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSFQLDTANFNLHSMFREVLNLIKPVACVKKLSLTLHFASDLPVYAIGDEKRLMQTLLNVVGNAVKFSKEGSISITAFVAKPESFRDIRFPDFIPVPSDGHFYLRVQVKDSGSGVNPQDIPKLFTKFAQNQLATRNPVGNGLGLAICRRFVNLMEGHIWIESEGIGKGCTASFIVKLRIPDRSNEFKLPYMPKALVNHGSTSIAGLKILVMDDNGVSRSATKGLLMHLGCDVTTIGSSEECLRVVSQEHKVVFMDICTGLDGYELAVRIQEKFANRQDRPLIVALTGNTNKWTQENCTRAGVNGLVLKPVSVEKMKSVLTELLERRFVFETV 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04950 739 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 732 - -
Vifa2g04950 739 Pfam Response regulator receiver domain 615 725 IPR001789 GO:0000160
Vifa2g04950 739 Gene3D - 309 407 - -
Vifa2g04950 739 SUPERFAMILY GAF domain-like 158 319 - -
Vifa2g04950 739 PRINTS Bacterial sensor protein C-terminal signature 545 563 IPR004358 GO:0016310|GO:0016772
Vifa2g04950 739 PRINTS Bacterial sensor protein C-terminal signature 511 525 IPR004358 GO:0016310|GO:0016772
Vifa2g04950 739 SMART REC_2 613 726 IPR001789 GO:0000160
Vifa2g04950 739 Gene3D - 136 308 IPR029016 -
Vifa2g04950 739 Gene3D - 408 591 IPR036890 -
Vifa2g04950 739 FunFam Ethylene receptor 1 408 589 - -
Vifa2g04950 739 Gene3D - 607 739 - -
Vifa2g04950 739 CDD HisKA 341 404 IPR003661 GO:0000155|GO:0007165
Vifa2g04950 739 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 329 409 IPR036097 GO:0000155|GO:0007165
Vifa2g04950 739 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 397 587 IPR036890 -
Vifa2g04950 739 ProSiteProfiles Histidine kinase domain profile. 350 588 IPR005467 -
Vifa2g04950 739 Pfam GAF domain 158 307 IPR003018 GO:0005515
Vifa2g04950 739 SUPERFAMILY CheY-like 610 732 IPR011006 -
Vifa2g04950 739 SMART HisKA_10 343 408 IPR003661 GO:0000155|GO:0007165
Vifa2g04950 739 SMART HKATPase_4 455 588 IPR003594 -
Vifa2g04950 739 SMART gaf_1 158 317 IPR003018 GO:0005515
Vifa2g04950 739 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 585 IPR003594 -
Vifa2g04950 739 PIRSF Ethylen_sen_hybr_HK 1 736 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vifa2g04950 739 ProSiteProfiles Response regulatory domain profile. 614 730 IPR001789 GO:0000160
Vifa2g04950 739 FunFam Ethylene receptor 607 739 - -
Vifa2g04950 739 FunFam Ethylene receptor 1 310 406 - -
Vifa2g04950 739 Pfam His Kinase A (phospho-acceptor) domain 344 408 IPR003661 GO:0000155|GO:0007165
Vifa2g04950 739 FunFam Ethylene response sensor 136 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04950 Vifa-Chr2 1470384057 1470387118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04950 1 737 Miscellaneous Gene Families AT1G66340 77.703 0.0 1184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g04950 GAF 3.2e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04950 K14509 - gmx:100795340 1296.57