Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04946 ATGGAAGATAAAATTGACAACAAGCGCAAAGCCACAATGGCACCTAACGATGATGATGGTCGTCATAATCAGGATCTTCCGGTTCCCTTCAGAAAAGTAAAAGTACTTATTGTTGACAATGATCCTCGCACTCTAAGGATTCATGAAAACCTATTGAAATCACTTGGTGTGGAAACTCGTGCTGTCAAAGATGGTCGAGAAGCCATAAACGTAACTGCTTGGAATGATTATTCTCTTTCAGCCTATGACCTAATTCTCATTGGTAGACATTTACCTTTCAGAAACGGGATTGAGGTGACGAAGACACTGCGAGCTATAGGGTACCCTAGCAGGATTGTTGGAGTTACACATTCTCTAACAGAAGCTGAGCGGGAAGAGTTTATGAGTGCAGGGGTAGATGATATAGTTGATTATGAGAGGCCAATGTCCCTTGAAACTGTTAAGAGGCTAGTTGCAGAAACTCCCCCTCCCCGAGTGTGGAGGGAAAAAGCTATTTATGATGATCATATTAATGGTAATGGTTCTGGGTCTACTTCTAGTTCTAGGAAAGTTTCTAGAAAGATTAAGTAG 570 0.4158 MEDKIDNKRKATMAPNDDDGRHNQDLPVPFRKVKVLIVDNDPRTLRIHENLLKSLGVETRAVKDGREAINVTAWNDYSLSAYDLILIGRHLPFRNGIEVTKTLRAIGYPSRIVGVTHSLTEAEREEFMSAGVDDIVDYERPMSLETVKRLVAETPPPRVWREKAIYDDHINGNGSGSTSSSRKVSRKIK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04946 189 CDD REC_hyHK_CKI1_RcsC-like 35 151 - -
Vifa2g04946 189 MobiDBLite consensus disorder prediction 168 189 - -
Vifa2g04946 189 SMART REC_2 33 151 IPR001789 GO:0000160
Vifa2g04946 189 SUPERFAMILY CheY-like 31 153 IPR011006 -
Vifa2g04946 189 ProSiteProfiles Response regulatory domain profile. 34 153 IPR001789 GO:0000160
Vifa2g04946 189 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g04946 189 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 153 - -
Vifa2g04946 189 Pfam Response regulator receiver domain 35 136 IPR001789 GO:0000160
Vifa2g04946 189 Gene3D - 30 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04946 Vifa-Chr2 1470305313 1470305992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04946 23 143 Response Regulator Gene Family AT3G04280 36.066 1.95e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g04946 Response_reg 1.9e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04946 - K07678 psat:127105962 294.278