Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g04943 | ATGGCTGAATACGAAGAAGAAGAAAGATACGACGGGAACGGAGCCGGCGCCGGAGGCGGAGAAGGCGGAGAAGAAGGAGGAGGAGGAGGAGAGGATCTCGACACCACTCATCCCTATCCTTCTTCTGCATCTTCTCCTCAACCTCTCGATCAGTCCGTTCCTAAATCTCGTCATGAATCGCGTGAATATGATAGAGAATCTTCGAGAAGCAGAGAAAAAGAACGAGAGAAAGATAGGAAAAGAGATAAGGAGAGGCACAGAGATAGAGACAGAGAGAGGGATCGTGGTGATGGGGAGAAGGAAAGGGATCCTCACCACAGAGACTATCGACAGCGTGACAGAAAGGATAGGGAAAGGGGTAGGGATAGAGATAGGGATGACGGAGATTCTCACAGGAGTCGTGACCGTGATCATGACAGAAGAGGAAGAGGGGATTATGATCGAGAGGAAAGGCATAAACGTAGGTCTCGATCTATTTCACCGGGTAAAGATAGATCTGAGCATGGAACAAGGTCACGTTCTCGCTCGAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCTCCCCCTGCTTCTGCAATGTTAGCTGGTGCTGCCGCTGTTACAGTATGGAAAAAAGTTCATATCAAATTGCATGCTGTTATCTGGGCAATGTTGGGCTACTTGCCCCAATGTGCTGACAATGGGCGTGAGCCGACATCTGTAGCTTTTATGTCCATGGAGGAATCAATGCACCGGTATTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACTATATATACTTTGGTAGACATTACTACGCCAAATCCTACAATTCCTGGAGTGTTGCAAAACATGTATCCAATGGCTACTAGTCAGATGCAACAGTTCAGTGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGAAGAGTTTATGTTGGAGGACTCCCTCCGACAGCCAATGAGCAGTCTGTCGCTATTTTCTTCAGCCAGGTCATGGCTAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAGTTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGGGCACCTGTCAAAGTTAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGAAGGCCCTGATCGCATTTTTGTGGGTGGACTTCCGTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTAGAAACTTTTGGTCCTCTACGGGGTTTTGATCTGGTGAAAGATAGAGAAACAGGAAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTCGCAGTTACAGATATTGCATGTGCAGCTCTTAATGGAATTAAGATGGGAGATAAGACTCTTACTGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACCAACGCAGTTTCTCCTGACGAGCTCAAAGAAGATGAGGACTTTGAAGAGATCATCGATGACATGAGACAGGAATGCTCCAAATTTGGTACTTTGGTGAACGTTGTGATCCCTCGCCCACAGCCAGATGGGGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATACTGAGGGTGCTACAAAAGCCTGCACTGGATTGAATGGGAGAAAATTCGGTGGAAATGAAGTAATAGCCGTCTTCTATCAAGAGAACAAGTTTGCTCAGGGGGATTATGAAGGCTAA | 1932 | 0.4612 | MAEYEEEERYDGNGAGAGGGEGGEEGGGGGEDLDTTHPYPSSASSPQPLDQSVPKSRHESREYDRESSRSREKEREKDRKRDKERHRDRDRERDRGDGEKERDPHHRDYRQRDRKDRERGRDRDRDDGDSHRSRDRDHDRRGRGDYDREERHKRRSRSISPGKDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTVWKKVHIKLHAVIWAMLGYLPQCADNGREPTSVAFMSMEESMHRYLVGLVRLQLETIYTLVDITTPNPTIPGVLQNMYPMATSQMQQFSALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVSPDELKEDEDFEEIIDDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDTEGATKACTGLNGRKFGGNEVIAVFYQENKFAQGDYEG | 643 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g04943 | 643 | Gene3D | - | 537 | 642 | IPR012677 | - | |
| Vifa2g04943 | 643 | Gene3D | - | 420 | 525 | IPR012677 | - | |
| Vifa2g04943 | 643 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 429 | 507 | IPR000504 | GO:0003723 | |
| Vifa2g04943 | 643 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 309 | 392 | IPR000504 | GO:0003723 | |
| Vifa2g04943 | 643 | MobiDBLite | consensus disorder prediction | 37 | 53 | - | - | |
| Vifa2g04943 | 643 | PANTHER | RNA-BINDING PROTEIN | 50 | 641 | - | - | |
| Vifa2g04943 | 643 | CDD | RRM2_U2AF65 | 429 | 505 | - | - | |
| Vifa2g04943 | 643 | CDD | RRM3_U2AF65 | 541 | 629 | - | - | |
| Vifa2g04943 | 643 | FunFam | U2 snRNP auxiliary factor large subunit | 406 | 519 | - | - | |
| Vifa2g04943 | 643 | CDD | RRM1_U2AF65 | 308 | 390 | - | - | |
| Vifa2g04943 | 643 | MobiDBLite | consensus disorder prediction | 54 | 171 | - | - | |
| Vifa2g04943 | 643 | SUPERFAMILY | RNA-binding domain, RBD | 430 | 634 | IPR035979 | GO:0003676 | |
| Vifa2g04943 | 643 | SMART | rrm2_1 | 543 | 629 | IPR003954 | GO:0003676 | |
| Vifa2g04943 | 643 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 566 | 626 | IPR000504 | GO:0003723 | |
| Vifa2g04943 | 643 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 431 | 500 | IPR000504 | GO:0003723 | |
| Vifa2g04943 | 643 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 311 | 385 | IPR000504 | GO:0003723 | |
| Vifa2g04943 | 643 | SUPERFAMILY | RNA-binding domain, RBD | 301 | 395 | IPR035979 | GO:0003676 | |
| Vifa2g04943 | 643 | FunFam | U2 snRNP auxiliary factor large subunit | 537 | 642 | - | - | |
| Vifa2g04943 | 643 | MobiDBLite | consensus disorder prediction | 1 | 183 | - | - | |
| Vifa2g04943 | 643 | FunFam | U2 snRNP auxiliary factor large subunit | 304 | 405 | - | - | |
| Vifa2g04943 | 643 | Gene3D | - | 304 | 405 | IPR012677 | - | |
| Vifa2g04943 | 643 | SMART | rrm1_1 | 430 | 503 | IPR000504 | GO:0003723 | |
| Vifa2g04943 | 643 | SMART | rrm1_1 | 543 | 629 | IPR000504 | GO:0003723 | |
| Vifa2g04943 | 643 | SMART | rrm1_1 | 310 | 388 | IPR000504 | GO:0003723 | |
| Vifa2g04943 | 643 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 542 | 634 | IPR000504 | GO:0003723 | |
| Vifa2g04943 | 643 | NCBIfam | U2 snRNP auxilliary factor, large subunit, splicing factor | 270 | 641 | IPR006529 | GO:0003723|GO:0005634|GO:0006397 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g04943 | Vifa-Chr2 | 1469773773 | 1469779563 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa2g04943 | 431 | 622 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 26.943 | 4.73e-07 | 51.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g04943 | K12837 | - | gmx:100793801 | 682.945 |