Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04942 ATGGCTGAATACGAAGAAGAAGAAAGATACGACGGGAACGGAGCCGGCGCCGGAGGCGGAGAAGGCGGAGAAGAAGGAGGAGGAGGAGGAGAGGATCTCGACACCACTCATCCCTATCCTTCTTCTGCATCTTCTCCTCAACCTCTCGATCAGTCCGTTCCTAAATCTCGTCATGAATCGCGTGAATATGATAGAGAATCTTCGAGAAGCAGAGAAAAAGAACGAGAGAAAGATAGGAAAAGAGATAAGGAGAGGCACAGAGATAGAGACAGAGAGAGGGATCGTGGTGATGGGGAGAAGGAAAGGGATCCTCACCACAGAGACTATCGACAGCGTGACAGAAAGGATAGGGAAAGGGGTAGGGATAGAGATAGGGATGACGGAGATTCTCACAGGAGTCGTGACCGTGATCATGACAGAAGAGGAAGAGGGGATTATGATCGAGAGGAAAGGCATAAACGTAGGTCTCGATCTATTTCACCGGGTAAAGATAGATCTGAGCATGGAACAAGGTCACGTTCTCGCTCGAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCTCCCCCTGCTTCTGCAATGTTAGCTGGTGCTGCCGCTGTTACAGGTCAGATTACTACGCCAAATCCTACAATTCCTGGAGTGTTGCAAAACATGTATCCAATGGCTACTAGTCAGATGCAACAGTTCAGTGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGAAGAGTTTATGTTGGAGGACTCCCTCCGACAGCCAATGAGCAGTCTGTCGCTATTTTCTTCAGCCAGGTCATGGCTAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAGTTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGGGCACCTGTCAAAGTTAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGAAGGCCCTGATCGCATTTTTGTGGGTGGACTTCCGTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTAGAAACTTTTGGTCCTCTACGGGGTTTTGATCTGGTGAAAGATAGAGAAACAGGAAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTCGCAGTTACAGATATTGCATGTGCAGCTCTTAATGGAATTAAGATGGGAGATAAGACTCTTACTGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACCAACGCAGTTTCTCCTGACGAGCTCAAAGAAGATGAGGACTTTGAAGAGATCATCGATGACATGAGACAGGAATGCTCCAAATTTGGTACTTTGGTGAACGTTGTGATCCCTCGCCCACAGCCAGATGGGGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATACTGAGGGTGCTACAAAAGCCTGCACTGGATTGAATGGGAGAAAATTCGGTGGAAATGAAGTAATAGCCGTCTTCTATCAAGAGAACAAGTTTGCTCAGGGGGATTATGAAGGCTAA 1752 0.4646 MAEYEEEERYDGNGAGAGGGEGGEEGGGGGEDLDTTHPYPSSASSPQPLDQSVPKSRHESREYDRESSRSREKEREKDRKRDKERHRDRDRERDRGDGEKERDPHHRDYRQRDRKDRERGRDRDRDDGDSHRSRDRDHDRRGRGDYDREERHKRRSRSISPGKDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTGQITTPNPTIPGVLQNMYPMATSQMQQFSALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVSPDELKEDEDFEEIIDDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDTEGATKACTGLNGRKFGGNEVIAVFYQENKFAQGDYEG 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04942 583 CDD RRM2_U2AF65 369 445 - -
Vifa2g04942 583 FunFam U2 snRNP auxiliary factor large subunit 477 582 - -
Vifa2g04942 583 CDD RRM3_U2AF65 481 569 - -
Vifa2g04942 583 SMART rrm1_1 250 328 IPR000504 GO:0003723
Vifa2g04942 583 SMART rrm1_1 483 569 IPR000504 GO:0003723
Vifa2g04942 583 SMART rrm1_1 370 443 IPR000504 GO:0003723
Vifa2g04942 583 MobiDBLite consensus disorder prediction 37 53 - -
Vifa2g04942 583 Gene3D - 360 465 IPR012677 -
Vifa2g04942 583 PANTHER RNA-BINDING PROTEIN 50 581 - -
Vifa2g04942 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 369 447 IPR000504 GO:0003723
Vifa2g04942 583 Gene3D - 244 345 IPR012677 -
Vifa2g04942 583 SUPERFAMILY RNA-binding domain, RBD 370 574 IPR035979 GO:0003676
Vifa2g04942 583 MobiDBLite consensus disorder prediction 54 171 - -
Vifa2g04942 583 Gene3D - 477 582 IPR012677 -
Vifa2g04942 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 332 IPR000504 GO:0003723
Vifa2g04942 583 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 64 581 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vifa2g04942 583 CDD RRM1_U2AF65 248 330 - -
Vifa2g04942 583 MobiDBLite consensus disorder prediction 1 184 - -
Vifa2g04942 583 SUPERFAMILY RNA-binding domain, RBD 241 335 IPR035979 GO:0003676
Vifa2g04942 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 482 574 IPR000504 GO:0003723
Vifa2g04942 583 SMART rrm2_1 483 569 IPR003954 GO:0003676
Vifa2g04942 583 FunFam U2 snRNP auxiliary factor large subunit 244 345 - -
Vifa2g04942 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 566 IPR000504 GO:0003723
Vifa2g04942 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 325 IPR000504 GO:0003723
Vifa2g04942 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 440 IPR000504 GO:0003723
Vifa2g04942 583 FunFam U2 snRNP auxiliary factor large subunit 346 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04942 Vifa-Chr2 1469773773 1469779563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04942 371 562 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 9.54e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04942 K12837 - gmx:100793801 743.421