Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04941 ATGGCTGAATACGAAGAAGAAGAAAGATACGACGGGAACGGAGCCGGCGCCGGAGGCGGAGAAGGCGGAGAAGAAGGAGGAGGAGGAGGAGAGGATCTCGACACCACTCATCCCTATCCTTCTTCTGCATCTTCTCCTCAACCTCTCGATCAGTCCGTTCCTAAATCTCGTCATGAATCGCGTGAATATGATAGAGAATCTTCGAGAAGCAGAGAAAAAGAACGAGAGAAAGATAGGAAAAGAGATAAGGAGAGGCACAGAGATAGAGACAGAGAGAGGGATCGTGGTGATGGGGAGAAGGAAAGGGATCCTCACCACAGAGACTATCGACAGCGTGACAGAAAGGATAGGGAAAGGGGTAGGGATAGAGATAGGGATGACGGAGATTCTCACAGGAGTCGTGACCGTGATCATGACAGAAGAGGAAGAGGGGATTATGATCGAGAGGAAAGGCATAAACGTAGGTCTCGATCTATTTCACCGGGTAAAGATAGATCTGAGCATGGAACAAGGTCACGTTCTCGCTCGAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCTCCCCCTGCTTCTGCAATGTTAGCTGGTGCTGCCGCTGTTACAGGTCAGATTACTACGCCAAATCCTACAATTCCTGGAGTGTTGCAAAACATGTATCCAATGGCTACTAGTCAGTTCAGTGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGAAGAGTTTATGTTGGAGGACTCCCTCCGACAGCCAATGAGCAGTCTGTCGCTATTTTCTTCAGCCAGGTCATGGCTAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAGTTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGGGCACCTGTCAAAGTTAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGAAGGCCCTGATCGCATTTTTGTGGGTGGACTTCCGTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTAGAAACTTTTGGTCCTCTACGGGGTTTTGATCTGGTGAAAGATAGAGAAACAGGAAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTCGCAGTTACAGATATTGCATGTGCAGCTCTTAATGGAATTAAGATGGGAGATAAGACTCTTACTGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACCAACGCAGTTTCTCCTGACGAGCTCAAAGAAGATGAGGACTTTGAAGAGATCATCGATGACATGAGACAGGAATGCTCCAAATTTGGTACTTTGGTGAACGTTGTGATCCCTCGCCCACAGCCAGATGGGGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATACTGAGGGTGCTACAAAAGCCTGCACTGGATTGAATGGGAGAAAATTCGGTGGAAATGAAGTAATAGCCGTCTTCTATCAAGAGAACAAGTTTGCTCAGGGGGATTATGAAGGCTAA 1743 0.4647 MAEYEEEERYDGNGAGAGGGEGGEEGGGGGEDLDTTHPYPSSASSPQPLDQSVPKSRHESREYDRESSRSREKEREKDRKRDKERHRDRDRERDRGDGEKERDPHHRDYRQRDRKDRERGRDRDRDDGDSHRSRDRDHDRRGRGDYDREERHKRRSRSISPGKDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTGQITTPNPTIPGVLQNMYPMATSQFSALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVSPDELKEDEDFEEIIDDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDTEGATKACTGLNGRKFGGNEVIAVFYQENKFAQGDYEG 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04941 580 FunFam U2 snRNP auxiliary factor large subunit 241 342 - -
Vifa2g04941 580 MobiDBLite consensus disorder prediction 37 53 - -
Vifa2g04941 580 Gene3D - 357 462 IPR012677 -
Vifa2g04941 580 SUPERFAMILY RNA-binding domain, RBD 367 571 IPR035979 GO:0003676
Vifa2g04941 580 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 322 IPR000504 GO:0003723
Vifa2g04941 580 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 437 IPR000504 GO:0003723
Vifa2g04941 580 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 563 IPR000504 GO:0003723
Vifa2g04941 580 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 64 578 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vifa2g04941 580 Gene3D - 474 579 IPR012677 -
Vifa2g04941 580 CDD RRM3_U2AF65 478 566 - -
Vifa2g04941 580 MobiDBLite consensus disorder prediction 54 171 - -
Vifa2g04941 580 MobiDBLite consensus disorder prediction 1 184 - -
Vifa2g04941 580 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 479 571 IPR000504 GO:0003723
Vifa2g04941 580 Gene3D - 241 342 IPR012677 -
Vifa2g04941 580 SUPERFAMILY RNA-binding domain, RBD 209 332 IPR035979 GO:0003676
Vifa2g04941 580 FunFam U2 snRNP auxiliary factor large subunit 474 579 - -
Vifa2g04941 580 PANTHER RNA-BINDING PROTEIN 50 578 - -
Vifa2g04941 580 CDD RRM1_U2AF65 245 327 - -
Vifa2g04941 580 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 444 IPR000504 GO:0003723
Vifa2g04941 580 CDD RRM2_U2AF65 366 442 - -
Vifa2g04941 580 SMART rrm1_1 247 325 IPR000504 GO:0003723
Vifa2g04941 580 SMART rrm1_1 367 440 IPR000504 GO:0003723
Vifa2g04941 580 SMART rrm1_1 480 566 IPR000504 GO:0003723
Vifa2g04941 580 FunFam U2 snRNP auxiliary factor large subunit 343 456 - -
Vifa2g04941 580 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 329 IPR000504 GO:0003723
Vifa2g04941 580 SMART rrm2_1 480 566 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04941 Vifa-Chr2 1469773773 1469779563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04941 368 559 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 1.04e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04941 K12837 - gmx:100793801 732.25