Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04919 ATGGCATTTTGGGGAGTTGAAATCAAACCTGGAAAGCCTTTCACTCACCAATACGATGCTTCCAGAGGACGCCTCCACATTTCAATGGCCACTTTGGGGCTTGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTTTCTTTGCGCTCTTTATCCTGGAAAAAGTGAGTCGTTGCAGTTGAATTTGGAGTTTGAAGAAGATGGTAACGTTGTTCTCTCTGTCATTGGCCCTCGGAGTATTCATCTCTGCGGGTATTATCTTGCTCGTGGACACTATACCAATACTATGGATGAATCGGAATCGTATGGAGAAGATATAGCTGATACAGAGACAGAGAGATCTGAACACAGTGATGAAGACGACTACGATGATAGTTTTATTGATGATGACGGTGATACAGTTTTCCCACCATCTCCTATTTCCAATCAGGAGGAAGGTTCTTCTGATAGCGGTCGAAAAGTTACAAAAGGAAGCCGAAGAAGGCTGAGGAAGAAGTACCAGTTGGTAGAGTCGGACGGGGATGGCGGTTGTGAAGAAAAGAAAATTATCAATGACAACATGCATGTTGAATCTCAGGAAATTGACGACGAAGATAGTCTACCAATTTCATCTATTTCCAAGAATAAAGCCTTTGGAAGGGTCTTGGATCAGGAAATGGATGATAATGTTGATAAAGAAATAGTTGATGCTGGCAACAAAGATGGTGAAGACCGTGGAGACAATATTATTGAAACAACATTGAAAACTGGCAATGTTGTCGTAGACAGTCAGACTCATAGGGAAGCTGAACCTTCAGATCAATTGGTAGATCCCTGCCCTGTTTTGAATGTTGGGGATATTAAAAAGTCAAAAAAGAAAAAGAAGGAAAAGGAAAAAGAAACAAAGAGTTCTTGTAATGACCATTCCACTGAACTTGATAATGCTGTGCAAGATGAACCAAAAATGAACACAACACAGGATCTTCTGGCAGGAAATGAACAGATCCAGGAGCAAACTGATGATAAGAAAGCTGAACCTTCAGATCAATTGGTAGATCCTTGCACTGTTCTGGATGTTGGGGATATTAAAAAGTCAAAAAAGAATAAAAAGGAAAAAAAAACAAAGAGTTCTTGCAATGGCCAATCGGCCAAGGTAGGTAATGCTGTTCAAGATGAGCCAAAAATGAATATGACTCAGGATCTACTGGCAGGAAATGAACAGAACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCACAGATAAAATACTACTACTACCTTCCTCACAGGTTGGTCAAGGACAGGATGAAAAACCAAAGAGAAAAAGGAAGGAACGGTCCAAGGATGAGACACTTCTTACTGCCCGCGGTGCTTGTATTAGCAACGTTACTAACCCGCCTCAGGGAAATGAACACAATAGTCAGGACACAGTTAATGGGGATTTTAAGATTTTAGACACTGTTGCATTGCCTTCCACTGAAACGGAATCTCAAAAGAAAACAAAGAAGAGAAAGAAAGAGCATTTAAACAAAGCTTCACAGCCTGAAGGTGACAATGGAAATGGTGAAGCCAAGAAAGAGACAGTAGAGTCTGATAGTCTGATTGATAAGTTTTCTGAAAGGAAAGAGCAACATCCAAAGCTTACAATTGAAAACAATGTGGACAACGATGGAAATCAATCTGAAGACAAGAAAGTTAAGAAAAAGAAGAAAAGTAAAAGCAAAGGAAATGAAGTTGTAAATTCTGACGTGCCTTTATCCGTTGAGCCAATTACTGAGATAATGAAAGAGGATGGAAATAATACGGAGGATGCAAAGTCTTCCGAAGTTAGAACACTGTCAGATGGACTAGTTATTCAAGAGCTAGAGTCCGGGAAAGCAAATGGGAAAATTGCTGCATCAGGGAAAAAGATCAGCATCAATTACACTGGCAAGTTGAAGGAAAATGGAGTGGTGGTTGAGTCAAATGCTGGCGAAGCTCCTTTCAAATTTCGCCTCGGTAAAGGAGAAGTTATTAAGGGTTGGGATATTGGCCTTGAAGGTATGCAAGTTGGAGAAAAGAGAAGAGTTGTGATACCACCGTCAATGACGTCTAAGAAAGATGGAGACAGTGGTAGCATACCACCAAATTCATGGTTGGTTTATGACTTTGAACTGGTTAAAGTTCATTGA 2175 0.4051 MAFWGVEIKPGKPFTHQYDASRGRLHISMATLGLGTAITKSTLQCNVGNKSPVFLCALYPGKSESLQLNLEFEEDGNVVLSVIGPRSIHLCGYYLARGHYTNTMDESESYGEDIADTETERSEHSDEDDYDDSFIDDDGDTVFPPSPISNQEEGSSDSGRKVTKGSRRRLRKKYQLVESDGDGGCEEKKIINDNMHVESQEIDDEDSLPISSISKNKAFGRVLDQEMDDNVDKEIVDAGNKDGEDRGDNIIETTLKTGNVVVDSQTHREAEPSDQLVDPCPVLNVGDIKKSKKKKKEKEKETKSSCNDHSTELDNAVQDEPKMNTTQDLLAGNEQIQEQTDDKKAEPSDQLVDPCTVLDVGDIKKSKKNKKEKKTKSSCNGQSAKVGNAVQDEPKMNMTQDLLAGNEQNQQQADDKKAETTDKILLLPSSQVGQGQDEKPKRKRKERSKDETLLTARGACISNVTNPPQGNEHNSQDTVNGDFKILDTVALPSTETESQKKTKKRKKEHLNKASQPEGDNGNGEAKKETVESDSLIDKFSERKEQHPKLTIENNVDNDGNQSEDKKVKKKKKSKSKGNEVVNSDVPLSVEPITEIMKEDGNNTEDAKSSEVRTLSDGLVIQELESGKANGKIAASGKKISINYTGKLKENGVVVESNAGEAPFKFRLGKGEVIKGWDIGLEGMQVGEKRRVVIPPSMTSKKDGDSGSIPPNSWLVYDFELVKVH 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04919 724 Gene3D - 593 724 IPR046357 GO:0003755
Vifa2g04919 724 MobiDBLite consensus disorder prediction 287 316 - -
Vifa2g04919 724 MobiDBLite consensus disorder prediction 436 453 - -
Vifa2g04919 724 MobiDBLite consensus disorder prediction 105 173 - -
Vifa2g04919 724 MobiDBLite consensus disorder prediction 122 138 - -
Vifa2g04919 724 Gene3D Nucleoplasmin core domain 1 99 - -
Vifa2g04919 724 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 401 - -
Vifa2g04919 724 MobiDBLite consensus disorder prediction 521 551 - -
Vifa2g04919 724 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 636 724 IPR001179 GO:0003755
Vifa2g04919 724 MobiDBLite consensus disorder prediction 458 482 - -
Vifa2g04919 724 MobiDBLite consensus disorder prediction 317 336 - -
Vifa2g04919 724 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vifa2g04919 724 SUPERFAMILY FKBP-like 595 723 - -
Vifa2g04919 724 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 632 721 IPR001179 GO:0003755
Vifa2g04919 724 MobiDBLite consensus disorder prediction 259 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04919 Vifa-Chr2 1463474774 1463483754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04919 635 721 Calmodulin-binding Proteins AT5G48570 40.230 1.64e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04919 K14826 - jre:109006154 435.647