Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04917 ATGGCATTTTGGGGAGTTGAAATCAAACCTGGAAAGCCTTTCACTCACCAATACGATGCTTCCAGAGGACGCCTCCACATTTCAATGGCCACTTTGGGGCTTGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTTTCTTTGCGCTCTTTATCCTGGAAAAAGTGAGTCGTTGCAGTTGAATTTGGAGTTTGAAGAAGATGGTAACGTTGTTCTCTCTGTCATTGGCCCTCGGAGTATTCATCTCTGCGGGTATTATCTTGCTCGTGGACACTATACCAATACTATGGATGAATCGGAATCGTATGGAGAAGATATAGCTGATACAGAGACAGAGAGATCTGAACACAGTGATGAAGACGACTACGATGATAGTTTTATTGATGATGACGGTGATACAGTTTTCCCACCATCTCCTATTTCCAATCAGGAGGAAGGTTCTTCTGATAGCGGTCGAAAAGTTACAAAAGGAAGCCGAAGAAGGCTGAGGAAGAAGTACCAGTTGGTAGAGTCGGACGGGGATGGCGGTTGTGAAGAAAAGAAAATTATCAATGACAACATGCATGTTGAATCTCAGGAAATTGACGACGAAGATAGTCTACCAATTTCATCTATTTCCAAGAATAAAGCCTTTGGAAGGGTCTTGGATCAGGAAATGGATGATAATGTTGATAAAGAAATAGTTGATGCTGGCAACAAAGATGGTGAAGACCGTGGAGACAATATTATTGAAACAACATTGAAAACTGGCAATGTTGTCGTAGACAGTCAGACTCATAGGGAAGCTGAACCTTCAGATCAATTGGTAGATCCCTGCCCTGTTTTGAATGTTGGGGATATTAAAAAGTCAAAAAAGAAAAAGAAGGAAAAGGAAAAAGAAACAAAGAGTTCTTGTAATGACCATTCCACTGAACTTGATAATGCTGTGCAAGATGAACCAAAAATGAACACAACACAGGATCTTCTGGCAGGAAATGAACAGATCCAGGAGCAAACTGATGATAAGAAAGCTGAACCTTCAGATCAATTGGTAGATCCTTGCACTGTTCTGGATGTTGGGGATATTAAAAAGTCAAAAAAGAATAAAAAGGAAAAAAAAACAAAGAGTTCTTGCAATGGCCAATCGGCCAAGGTAGGTAATGCTGTTCAAGATGAGCCAAAAATGAATATGACTCAGGATCTACTGGCAGGAAATGAACAGAACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCACAGATAAAATACTACTACTACCTTCCTCACAGGTTGGTCAAGGACAGGATGAAAAACCAAAGAGAAAAAGGAAGGAACGGTCCAAGGATGAGACACTTCTTACTGCCCGCGGTGCTTGTATTAGCAACGTTACTAACCCGCCTCAGGGAAATGAACACAATAGTCAGGACACAGTTAATGGCAGGGATTTTAAGATTTTAGACACTGTTGCATTGCCTTCCACTGAAACGGAATCTCAAAAGAAAACAAAGAAGAGAAAGAAAGAGCATTTAAACAAAGCTTCACAGCCTGAAGGTGACAATGGAAATGGTGAAGCCAAGAAAGAGACAGTAGAGTCTGATAGTCTGATTGATAAGTTTTCTGAAAGGAAAGAGCAACATCCAAAGCTTACAATTGAAAACAATGTGGACAACGATGGAAATCAATCTGAAGACAAGAAAGTTAAGAAAAAGAAGAAAAGTAAAAGCAAAGGAAATGAAGTTGTAAATTCTGACGTGCCTTTATCCGTTGAGCCAATTACTGAGATAATGAAAGAGGATGGAAATAATACGGAGGATGCAAAGTCTTCCGAAGTTAGAACACTGTCAGATGGACTAGTTATTCAAGAGCTAGAGTCCGGGAAAGCAAATGGGAAAATTGCTGCATCAGGGAAAAAGATCAGCATCAATTACACTGGCAAGTTGAAGGAAAATGGAGTGGTGGTTGAGTCAAATGCTGGCGAAGCTCCTTTCAAATTTCGCCTCGGTAAAGGAGAAGTTATTAAGGGTTGGGATATTGGCCTTGAAGGTATGCAAGTTGGAGAAAAGAGAAGAGTTGTGATACCACCGTCAATGACGTCTAAGAAAGATGGAGACAGTGGTAGCATACCACCAAATTCATGGTTGGTTTATGACTTTGAACTGGTTAAAGTTCATTGA 2178 0.4054 MAFWGVEIKPGKPFTHQYDASRGRLHISMATLGLGTAITKSTLQCNVGNKSPVFLCALYPGKSESLQLNLEFEEDGNVVLSVIGPRSIHLCGYYLARGHYTNTMDESESYGEDIADTETERSEHSDEDDYDDSFIDDDGDTVFPPSPISNQEEGSSDSGRKVTKGSRRRLRKKYQLVESDGDGGCEEKKIINDNMHVESQEIDDEDSLPISSISKNKAFGRVLDQEMDDNVDKEIVDAGNKDGEDRGDNIIETTLKTGNVVVDSQTHREAEPSDQLVDPCPVLNVGDIKKSKKKKKEKEKETKSSCNDHSTELDNAVQDEPKMNTTQDLLAGNEQIQEQTDDKKAEPSDQLVDPCTVLDVGDIKKSKKNKKEKKTKSSCNGQSAKVGNAVQDEPKMNMTQDLLAGNEQNQQQADDKKAETTDKILLLPSSQVGQGQDEKPKRKRKERSKDETLLTARGACISNVTNPPQGNEHNSQDTVNGRDFKILDTVALPSTETESQKKTKKRKKEHLNKASQPEGDNGNGEAKKETVESDSLIDKFSERKEQHPKLTIENNVDNDGNQSEDKKVKKKKKSKSKGNEVVNSDVPLSVEPITEIMKEDGNNTEDAKSSEVRTLSDGLVIQELESGKANGKIAASGKKISINYTGKLKENGVVVESNAGEAPFKFRLGKGEVIKGWDIGLEGMQVGEKRRVVIPPSMTSKKDGDSGSIPPNSWLVYDFELVKVH 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04917 725 MobiDBLite consensus disorder prediction 522 552 - -
Vifa2g04917 725 MobiDBLite consensus disorder prediction 287 316 - -
Vifa2g04917 725 MobiDBLite consensus disorder prediction 436 453 - -
Vifa2g04917 725 MobiDBLite consensus disorder prediction 105 173 - -
Vifa2g04917 725 MobiDBLite consensus disorder prediction 122 138 - -
Vifa2g04917 725 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 633 722 IPR001179 GO:0003755
Vifa2g04917 725 Gene3D Nucleoplasmin core domain 1 99 - -
Vifa2g04917 725 MobiDBLite consensus disorder prediction 458 482 - -
Vifa2g04917 725 MobiDBLite consensus disorder prediction 317 336 - -
Vifa2g04917 725 MobiDBLite consensus disorder prediction 261 583 - -
Vifa2g04917 725 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vifa2g04917 725 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 724 - -
Vifa2g04917 725 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 637 725 IPR001179 GO:0003755
Vifa2g04917 725 SUPERFAMILY FKBP-like 596 724 - -
Vifa2g04917 725 Gene3D - 594 725 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04917 Vifa-Chr2 1463474774 1463483754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04917 636 722 Calmodulin-binding Proteins AT5G48570 40.230 1.56e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04917 K14826 - jre:109006154 440.654