LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g04916	ATGGCATTTTGGGGAGTTGAAATCAAACCTGGAAAGCCTTTCACTCACCAATACGATGCTTCCAGAGGACGCCTCCACATTTCAATGGCCACTTTGGGGCTTGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTTTCTTTGCGCTCTTTATCCTGGAAAAAGTGAGTCGTTGCAGTTGAATTTGGAGTTTGAAGAAGATGGTAACGTTGTTCTCTCTGTCATTGGCCCTCGGAGTATTCATCTCTGCGGGTATTATCTTGCTCGTGGACACTATACCAATACTATGGATGAATCGGAATCGTATGGAGAAGATATAGCTGATACAGAGACAGAGAGATCTGAACACAGTGATGAAGACGACTACGATGATAGTTTTATTGATGATGACGGTGATACAGTTTTCCCACCATCTCCTATTTCCAATCAGGAGGAAGGTTCTTCTGATAGCGGTCGAAAAGTTACAAAAGGAAGCCGAAGAAGGCTGAGGAAGAAGTACCAGTTGGTAGAGTCGGACGGGGATGGCGGTTGTGAAGAAAAGAAAATTATCAATGACAACATGCATGTTGAATCTCAGGAAATTGACGACGAAGATAGTCTACCAATTTCATCTATTTCCAAGAATAAAGCCTTTGGAAGGGTCTTGGATCAGGAAATGGATGATAATGTTGATAAAGAAATAGTTGATGCTGGCAACAAAGATGGTGAAGACCGTGGAGACAATATTATTGAAACAACATTGAAAACTGGCAATGTTGTCGTAGACAGTCAGACTCATAGCAGGAAAGCTGAACCTTCAGATCAATTGGTAGATCCTTGCACTGTTCTGGATGTTGGGGATATTAAAAAGTCAAAAAAGAATAAAAAGGAAAAAAAAACAAAGAGTTCTTGCAATGGCCAATCGGCCAAGGTAGGTAATGCTGTTCAAGATGAGCCAAAAATGAATATGACTCAGGATCTACTGGCAGGAAATGAACAGAACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCACAGATAAAATACTACTACTACCTTCCTCACAGGTTGGTCAAGGACAGGATGAAAAACCAAAGAGAAAAAGGAAGGAACGGTCCAAGGATGAGACACTTCTTACTGCCCGCGGTGCTTGTATTAGCAACGTTACTAACCCGCCTCAGGGAAATGAACACAATAGTCAGGACACAGTTAATGGGGATTTTAAGATTTTAGACACTGTTGCATTGCCTTCCACTGAAACGGAATCTCAAAAGAAAACAAAGAAGAGAAAGAAAGAGCATTTAAACAAAGCTTCACAGCCTGAAGGTGACAATGGAAATGGTGAAGCCAAGAAAGAGACAGTAGAGTCTGATAGTCTGATTGATAAGTTTTCTGAAAGGAAAGAGCAACATCCAAAGCTTACAATTGAAAACAATGTGGACAACGATGGAAATCAATCTGAAGACAAGAAAGTTAAGAAAAAGAAGAAAAGTAAAAGCAAAGGAAATGAAGTTGTAAATTCTGACGTGCCTTTATCCGTTGAGCCAATTACTGAGATAATGAAAGAGGATGGAAATAATACGGAGGATGCAAAGTCTTCCGAAGTTAGAACACTGTCAGATGGACTAGTTATTCAAGAGCTAGAGTCCGGGAAAGCAAATGGGAAAATTGCTGCATCAGGGAAAAAGATCAGCATCAATTACACTGGCAAGTTGAAGGAAAATGGAGTGGTGGTTGAGTCAAATGCTGGCGAAGCTCCTTTCAAATTTCGCCTCGGTAAAGGAGAAGTTATTAAGGGTTGGGATATTGGCCTTGAAGGTATGCAAGTTGGAGAAAAGAGAAGAGTTGTGATACCACCGTCAATGACGTCTAAGAAAGATGGAGACAGTGGTAGCATACCACCAAATTCATGGTTGGTTTATGACTTTGAACTGGTTAAAGTTCATTGA	1953	0.4086	MAFWGVEIKPGKPFTHQYDASRGRLHISMATLGLGTAITKSTLQCNVGNKSPVFLCALYPGKSESLQLNLEFEEDGNVVLSVIGPRSIHLCGYYLARGHYTNTMDESESYGEDIADTETERSEHSDEDDYDDSFIDDDGDTVFPPSPISNQEEGSSDSGRKVTKGSRRRLRKKYQLVESDGDGGCEEKKIINDNMHVESQEIDDEDSLPISSISKNKAFGRVLDQEMDDNVDKEIVDAGNKDGEDRGDNIIETTLKTGNVVVDSQTHSRKAEPSDQLVDPCTVLDVGDIKKSKKNKKEKKTKSSCNGQSAKVGNAVQDEPKMNMTQDLLAGNEQNQQQADDKKAETTDKILLLPSSQVGQGQDEKPKRKRKERSKDETLLTARGACISNVTNPPQGNEHNSQDTVNGDFKILDTVALPSTETESQKKTKKRKKEHLNKASQPEGDNGNGEAKKETVESDSLIDKFSERKEQHPKLTIENNVDNDGNQSEDKKVKKKKKSKSKGNEVVNSDVPLSVEPITEIMKEDGNNTEDAKSSEVRTLSDGLVIQELESGKANGKIAASGKKISINYTGKLKENGVVVESNAGEAPFKFRLGKGEVIKGWDIGLEGMQVGEKRRVVIPPSMTSKKDGDSGSIPPNSWLVYDFELVKVH	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g04916	650	ProSiteProfiles	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	562	650	IPR001179	GO:0003755
	Vifa2g04916	650	Gene3D	-	519	650	IPR046357	GO:0003755
	Vifa2g04916	650	MobiDBLite	consensus disorder prediction	289	509	-	-
	Vifa2g04916	650	MobiDBLite	consensus disorder prediction	384	408	-	-
	Vifa2g04916	650	MobiDBLite	consensus disorder prediction	105	173	-	-
	Vifa2g04916	650	Pfam	Nucleoplasmin-like domain	3	95	IPR041232	-
	Vifa2g04916	650	MobiDBLite	consensus disorder prediction	122	138	-	-
	Vifa2g04916	650	PANTHER	FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA	41	649	-	-
	Vifa2g04916	650	SUPERFAMILY	FKBP-like	521	649	-	-
	Vifa2g04916	650	Gene3D	Nucleoplasmin core domain	1	99	-	-
	Vifa2g04916	650	MobiDBLite	consensus disorder prediction	362	379	-	-
	Vifa2g04916	650	MobiDBLite	consensus disorder prediction	447	477	-	-
	Vifa2g04916	650	Pfam	FKBP-type peptidyl-prolyl cis-trans isomerase	558	647	IPR001179	GO:0003755

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g04916	Vifa-Chr2	1463474774	1463483754	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g04916	561	647	Calmodulin-binding Proteins	AT5G48570	40.230	1.45e-14	75.1