Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04910 ATGGCTTCCACAGCAACACCTTCTCCTCAGATTCTATTATTCAATCCAATCTTAGGAAACACAAAAACAATAAGAGTAAGGTTATTTAGGATAACAACAACCACAAACTCTCACTACAGTTTGAAGGTTCATGCTTCCAAGGACTCTCAAGGACCCCAAAAAGCACCACCTGGAACTGACACGAGAATCCATTGGGAGAACGAAGATGAAGGATGGATTGGAGGTAGCACAAAACAGCAACAAACTAATGCAGAGGTGAAACCTAAGAAGCTTTTAGGTGAAGACTTTGCTGATTTGCTAAATTTTCAAGGTTCTCATTATGAATTCTTAGGAATATCACCAGAGTCTGATGTAGAAGAAATCAAAGTAGCTTTCAGGAAACTATCAAAAGAGTATCATCCAGACACAACTTCACTCCCTCTAAAGACTGCCTCAGAGAAGTTCATGAAACTACGAGAAGTTTACAATGTTCTCAGCAATGAAGAAAGTAGGAGATTTTATGACTGGACACTGGCTCAAGAGGTTGCAAGTCGCCAAGAAGAGAAGTTGAAAATAAAATTAGAGGATCCTTTTGAGGTAGCATTTAAAAATTATAAACCTGTTCCAGACATGGTTGATCGGCTAGGTGGAAAGAATATGAAGCTTAGTGACCAAGCAGTTTCTGCTATCACTATTGATGTTTTTATCATTATTTTCTCCATATGTTGTATAACTTATGTAGTTTTCTTTAAAGAACAGTAA 741 0.3752 MASTATPSPQILLFNPILGNTKTIRVRLFRITTTTNSHYSLKVHASKDSQGPQKAPPGTDTRIHWENEDEGWIGGSTKQQQTNAEVKPKKLLGEDFADLLNFQGSHYEFLGISPESDVEEIKVAFRKLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSNEESRRFYDWTLAQEVASRQEEKLKIKLEDPFEVAFKNYKPVPDMVDRLGGKNMKLSDQAVSAITIDVFIIIFSICCITYVVFFKEQ 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04910 246 Gene3D DnaJ domain 98 190 IPR036869 -
Vifa2g04910 246 SUPERFAMILY Chaperone J-domain 105 174 IPR036869 -
Vifa2g04910 246 ProSitePatterns Nt-dnaJ domain signature. 148 167 IPR018253 -
Vifa2g04910 246 CDD DnaJ 106 160 IPR001623 -
Vifa2g04910 246 PRINTS DnaJ domain signature 125 140 IPR001623 -
Vifa2g04910 246 PRINTS DnaJ domain signature 107 125 IPR001623 -
Vifa2g04910 246 PRINTS DnaJ domain signature 143 163 IPR001623 -
Vifa2g04910 246 SMART dnaj_3 104 163 IPR001623 -
Vifa2g04910 246 ProSiteProfiles dnaJ domain profile. 105 171 IPR001623 -
Vifa2g04910 246 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 1 246 IPR044618 -
Vifa2g04910 246 Pfam DnaJ domain 106 168 IPR001623 -
Vifa2g04910 246 FunFam DnaJ homolog subfamily C member 4 96 192 - -
Vifa2g04910 246 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04910 Vifa-Chr2 1461798919 1461799756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04910 106 173 C2H2 Transcription Factor Family AT1G74250 38.889 2.95e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04910 K23051 - bvg:104895126 298.901