Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04900 ATGGTTACTTGCACTGAGCACTTGGAAAATTTGCAAAACTGGACATTAGACCAAAGAATTAAAATTCGTCTAGAAGATACCGGTTTTCCACGTTTAAGCGAACTTGCAAAATGTCAACATGATAGCCAGCTTCTGAAATGTGTGGTATCCCATTTCAATACAGAGACATGTGGATTTGAATTTGGTGGTATAAAATTAGTTTTTGGCTTGAAAGATGTTCTCGAAATTACAGGCTTGCACATTACAGGCCAGTCTGTCACTGGGACCGCTGGTGACATGACTTATTGGTCCAACCAATGTTTTGGACAAGATTTGACCTTTAAAAAACAAAGGGCAATTCGAGGAGCCATTAAGCTATCTGTTCTTAGAGAAAAATTTATGGAAGTTCCACCAAGAGCAACTGAAGTTGAACTAGATCGACATACTAGAGCATATGCTCTTTATGTTCTAGGTTCGTCCTTATTCAGTAGTTCTTCTAAGGGGGATGTTGATACTCTCCATCTTCCATTGCTTTATCATGTTGAAAAAATAAAAGATTATGCCTGGGGTGCTGCTGCTCTTGCACACCTATATTGTTCTATGAAAAAAATTAAAGAAGAGGGTAAAAAGCATTTGCACGGGATTGCATTGTCCCTGCAGATCTTTGTATTCCTACATCTGACAAAGATCAAGGACTTACTCATGTTATCGAGTTTGGATTTCGTAAATGAACAACTTCCGTTGATCAATGATTGGTCGCGTCATTTAGAACAATTTACCTTGAACAAATGTAAAAAGGTAGATTATTTGGATTTAATTAGCACAACGACTGCTAAAGAGGTTAACTACAATCCATATGATAATATTCAATTCCCCGACCTGAAAGAATATTCAACTTTCGAGTTGGAAAGAAGGGTATGTTGTAAATCAACCATACAACCAACCTTTCTCATCAACTTTAATGAGGTTGCATTTTTTCAACCCCATAAATTTAAAAAACAATATTCTAATGCACGTGCCGGGGATAGAAAATGCACATACAAATGGAAATTGTACCCAAGAAGAGGTACAAAAGGGAAAAATTGGCAAGAGACGAAAAAGCATACAAAATATCTCAAGCATTGGAGCATAAGTTGTTTTAGTAAAAGACCACAACCTGAGGAACAACAACCCGAAAGAGTACAAGATGTTCGAACAGAAGAGCCAATTGAGGTGGAACACCATAATTTGGATGATGTCGTGGACAATCAAGAAAAGCATTGTGGAAGGAAAAGAAAAAGCATATGGAGTTCAAAAGAAAATGAAGTTGCTCATGAGGAGGATGCAGGAGATAACAATGAAGATGGGGAAGAAACAAAGACCAAGGAGACACTAGGCAAGTGGAAGCAACATGTACCCGTTTGTCTGTTTCTAGAGTGTATATACGCCGCCGCAAAGGGATTGAGTCACGAAGAAATGATTGAGAAAGAGATAGAGGCTAGCAGACAAAGGCTCTTAGTCTCACAGCTATGTATAGCAGAGCTAGATGACTCGGGCGGAGACCGGGTGTTCTGTGACAAATGCAAGACGTCAATATTTGCCCTCCACAAACATTGTCAGACATGCAATAGTGACTTTTGTCTCGCCTGTTGTCGTGACTTTTGTGATGCGCAGCTTCGAGGTGGTGCTGATCCAATTGAGTCACGTGTTACTGCCAAACATGGGGTTCACAAACGGCCAAGATCTGATAAGCATGAGGATAGTGATGACAGAGTTTGCTGTGATGGGTTTCTTGAACTGAGAAGCTTCTATCCTCCAAGTCACATTGCTGATTTGGTAGATGAAGCAAAAAAATTTGTAGACAAATACATGCATCGCATGCCTGTGATTTCAGACAAAACTCATAAGAACTTGCATTCAAGTTTGAATCGTAAGGCAGCATCTCGTAAAGAGTCAAGCGATAACGATATATATTGTCCGGAGGCTAAAAATACATGTCCTGAGGATTTACTACATTTTCAATGGCACTGGAGAAAAGGGGAGCCAGTAATTGTCAGGGAACTGCTTGGAGGTACTTATAATTCATTATGGAATCCATCAAGCATGAGCCGTGCAATCTGTCAGAAGCACAAGACTGTGAAGGCCATTGATTGCTCAAGTTTGCAGCAGAAAGTTGTTAACACCAAGAGGTTCTTTACTAGTTACACTAAAGGTTGGAAGTGTTCAGAGAAGCGGCCTTGTTGTATGTTGAAGTTGAAAGATTGGCCTCCTTCTGAATCATTTAAGGAATGTTTACCTGATCATTTTGAGGAGTTCGTATCTTTCTTGCCGTATAAAGAATACACTCATCCTATAAGTGGTTCTCTTAACCTTGCCGTGAAGTTGCCTGATGGTTGTCTGAAGCCAGACATGGGGCCAAAAGCATACATTGCATTTGGATTTGCTAAGGAGCTTGGGTGTGGTGATTCTGTGACAAAGCTCCATTGTGACATGTCTGATGCAGTAAACGTGTTGACTCATGTTGCTGAAGGGAAATTGGGTTCTGAGGATGTTACTGCCATTGAGAAATTGATGCCAAAGAACCTTGAGCAAGACAAGAGGGAACTACATGATATTCATCAGGATGGGGAGGCTAATGACATTATTTCTTCAGACACCGGCGCTAATGATGATGGCGCGTCTTCTGGGTCAAAGCTCAAAGAAGTTGAAAAAGGTACAGTGGAGCAAGGAGATAGTTTGTTGGATGCAGTGGATTCTTTGGATGGGGCTCTCTGGGATATTTTTCGAAGAAAGGATATACCTAAATTGGAGAGATATTTAAATAAGCATTTCGGAGAGTTCAGTCATTTTGGCGGTCTTCCTTTAAAGGAGGTTACTCACCCCATCCATGATCAGACCTTTTATCTGACTGTGGAGCATAAGAAGAAGCTTAAGGAGGAGTGTGGAATTGAGCCCTGGACCTTCACACAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGATGTCCTCATCAAGTCAGAAATCTGAAATCATGCACCAAGGTTGCACTTGATTTTGTCTCACCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAAGAATTCCGCGAACTTCCGGAAAATCATGGGTCCAAAGAGGACAAATTGCAGGTGAAGAAAATGGTTATACATGCTGTGGATGATGCGGTCAAAAGGTTGAAAAACTCTATCTTCGGTTAA 3177 0.407 MVTCTEHLENLQNWTLDQRIKIRLEDTGFPRLSELAKCQHDSQLLKCVVSHFNTETCGFEFGGIKLVFGLKDVLEITGLHITGQSVTGTAGDMTYWSNQCFGQDLTFKKQRAIRGAIKLSVLREKFMEVPPRATEVELDRHTRAYALYVLGSSLFSSSSKGDVDTLHLPLLYHVEKIKDYAWGAAALAHLYCSMKKIKEEGKKHLHGIALSLQIFVFLHLTKIKDLLMLSSLDFVNEQLPLINDWSRHLEQFTLNKCKKVDYLDLISTTTAKEVNYNPYDNIQFPDLKEYSTFELERRVCCKSTIQPTFLINFNEVAFFQPHKFKKQYSNARAGDRKCTYKWKLYPRRGTKGKNWQETKKHTKYLKHWSISCFSKRPQPEEQQPERVQDVRTEEPIEVEHHNLDDVVDNQEKHCGRKRKSIWSSKENEVAHEEDAGDNNEDGEETKTKETLGKWKQHVPVCLFLECIYAAAKGLSHEEMIEKEIEASRQRLLVSQLCIAELDDSGGDRVFCDKCKTSIFALHKHCQTCNSDFCLACCRDFCDAQLRGGADPIESRVTAKHGVHKRPRSDKHEDSDDRVCCDGFLELRSFYPPSHIADLVDEAKKFVDKYMHRMPVISDKTHKNLHSSLNRKAASRKESSDNDIYCPEAKNTCPEDLLHFQWHWRKGEPVIVRELLGGTYNSLWNPSSMSRAICQKHKTVKAIDCSSLQQKVVNTKRFFTSYTKGWKCSEKRPCCMLKLKDWPPSESFKECLPDHFEEFVSFLPYKEYTHPISGSLNLAVKLPDGCLKPDMGPKAYIAFGFAKELGCGDSVTKLHCDMSDAVNVLTHVAEGKLGSEDVTAIEKLMPKNLEQDKRELHDIHQDGEANDIISSDTGANDDGASSGSKLKEVEKGTVEQGDSLLDAVDSLDGALWDIFRRKDIPKLERYLNKHFGEFSHFGGLPLKEVTHPIHDQTFYLTVEHKKKLKEECGIEPWTFTQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRELPENHGSKEDKLQVKKMVIHAVDDAVKRLKNSIFG 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04900 1058 MobiDBLite consensus disorder prediction 863 890 - -
Vifa2g04900 1058 MobiDBLite consensus disorder prediction 556 576 - -
Vifa2g04900 1058 ProSiteProfiles JmjC domain profile. 770 1022 IPR003347 -
Vifa2g04900 1058 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 464 1054 IPR045109 GO:0032454|GO:0033169
Vifa2g04900 1058 SUPERFAMILY Clavaminate synthase-like 655 1051 - -
Vifa2g04900 1058 MobiDBLite consensus disorder prediction 425 448 - -
Vifa2g04900 1058 MobiDBLite consensus disorder prediction 865 879 - -
Vifa2g04900 1058 Gene3D Cupin 639 1030 - -
Vifa2g04900 1058 SMART cupin_9 751 1022 IPR003347 -
Vifa2g04900 1058 Pfam JmjC domain, hydroxylase 910 1005 IPR003347 -
Vifa2g04900 1058 Pfam Plant mobile domain 35 368 IPR019557 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04900 Vifa-Chr2 1459364804 1459371597 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa2g04900 PMD 6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04900 K15601 - vvi:100261347 545.814