Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04889 ATGCAACCTACTTCCGGCGGCGGTAGCGGCGGTTTGAAGCGTTTCCGGTCAACTCCGGCGAGTTGGATAGAATCGTTTGCTCTCAAAGAAGAAGAGGAAGACGAAATCCAGCAACAAGATAATTTCAGTTTCACTCAACTGCTTTCCAATAACGCTGCTGCTGCTCCTTCAACTTCCGATTCTCATCCTTATTTGCCTGATTACTACCACTACTCTTCATCACATACTCCTTCTTCCTCAAATGCTTTGAATAATCCATTCATACAGGGAGTTGAGGATAGTGATAATGCATTGGATCTTAAAATGGACAAAATTTTAGAGGATTCGGTTCCTTGCAAGATTCGAGCAAAGCGTGGCTGTGCTACACATCCAAGGAGTATTGCTGAAAGGGTTCGGAGGACTCGGATTAGTGACCGCATAAGAAAACTTCAAGAACTCGTGCCAAACATGGATAAGCAAACAAATACTGCAGAGATGTTAGATGAGGCTGTAGCTTATGTCAAGTTTCTACAAAATCAAATTGAGGAACTATCAGAACACCAACAGAGGTGTACATGCATGATTCATGAGTAA 573 0.4276 MQPTSGGGSGGLKRFRSTPASWIESFALKEEEEDEIQQQDNFSFTQLLSNNAAAAPSTSDSHPYLPDYYHYSSSHTPSSSNALNNPFIQGVEDSDNALDLKMDKILEDSVPCKIRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAEMLDEAVAYVKFLQNQIEELSEHQQRCTCMIHE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04889 190 Coils Coil 160 180 - -
Vifa2g04889 190 SMART finulus 126 176 IPR011598 GO:0046983
Vifa2g04889 190 FunFam Transcription factor bHLH130 family 121 189 - -
Vifa2g04889 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 188 IPR036638 GO:0046983
Vifa2g04889 190 Gene3D - 121 190 IPR036638 GO:0046983
Vifa2g04889 190 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 184 - -
Vifa2g04889 190 Pfam Helix-loop-helix DNA-binding domain 125 171 IPR011598 GO:0046983
Vifa2g04889 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 170 IPR011598 GO:0046983
Vifa2g04889 190 CDD bHLH_AtbHLH_like 125 178 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04889 Vifa-Chr2 1456636049 1456637883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04889 10 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 45.960 2.07e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g04889 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04889 - - gmx:100527723 194.512