Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04872 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGATCAACCCAAGCAACAAGGTTGACTGCCGCCCGACAGATAGGGGAGATTGCGAAGTTGCACCCTCAAGACTTAACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAAATGGGATACAAGAGTTGCCGCTGCTCATGCAATTGGGTCCATTGCTGAGAATGTTAAGCACATAAGCTTGAATGAACTTATTTCTTCTGTTGTAACAAAAATGTCTGAGAGCGGGATATCATGCAGTGTTGAGGATCTGTGTGCATGGCCTTATTTACAAGCAAAAATTACAGGAAGCTCATTTAGAAGCTTTGATTTGAATAAGGTGCTTGAATTTGGAGCTTTATTAGCATCAGGAGGGCAGGAGTACGATATTGGAAGCGATAATATAAAGAACCCAAGGGAGCGTTTGGTTCGCCAAAAGCAAAATCTCCGGCGCCGTTTGGGTTTAGATGTCTGCGAACAATTTATGGATATCAATGATGTAATTAGAGATGAAGATCTTTTGGCACATAAATCAGACCCGTATCTCAACGGCATGGATCATAAAGTTTTTACATCTTGTTCTGTACATAACATTCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCAAAGTGGCCGAGTGCTAGAGAACTGAATCTTTTAAAGCGCAAAGCAAAAAATACCTCAAAGGACCAAACAAAGAGCTGGTGCGAAGATGGAACAGAGGCTTCAGGCACTCAAAATTTGACTTCAAAAGGCACGTGTCCTGATTCGGTAAATCATAGTAAGGCATTCACACAAGTTAATCACGACGAATACGGATTTGAGCATGATGAAGATGGACAATGGCCTTTCAGCACTTTTGTCGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGGCATGGTAGTGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGAGTGTTGAAACACAACCCAAACTTGGGTGGGACTTCATTTGTGGAATTAGAAAACAAAAATACATCAAACGTGTTGAAGAGAGAAAGGGATATTGATTTAAATATGCAAGTTTCAGCAGATGATTGTGTCTTGAACATGAAGAAGCCAAAACTTGAAGATGTATCATTATCAACATCAATGGATAGCGTGATGACTTGCAGTAATGGAGGTGACACTGAAAACATCATTAGTTCTGAAACACAGGGTTGCACTTTACCTATAGACTATGGTAATGGGAAATTTGATGGTAGTTCTGTTGACATGAATGTGGAAACTCACTATGATGGTTTACATGATGCAAACAAGCAACCTGCTAATATAGCAGATCAGAAAGGTTATTCTGATGACCAAAAGATTCTCTCTGGAAACCCTAATATGCTGAGAAATCTTCCTCAGAATTGTGAGCTGATGAACTCCGTCAAAGTGGCTAGAAGTTCCTGGCTTCGAAACTGTGACTTTCTTCATGACTGTGTCATTCGCTTTTTGTGTGTATTGTCACTTGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCACCAGTGCGTGAAACCTGTGCACAGGCATTAGGGGCTGCATTTAAGTATATGCACGCAGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGTCCAGAATGGGAGATTCGTCATGGCAGTCTTCTCGGTATCAAATATTTAGTTGCTGTACGGCAGGAGATGCTTTCTGATTTGCTTGGACGTGTTCTTCCTGCCTGTAAATCTGGGTTGGAGGACCCCGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACACTACATTCAATTGTGATGCTATTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACTAGCAGTGTAATGAATCTGCTTGCAGAGATCTATTCTCATGAAGAGATGGTCCCAAAGATGTATAAAGTTTTTAAATTGGAAGACAGAGAAATTGAAAATGGAGCCGGTGCTTCTGGTGATGATGTGGAAGAAAATCCTTTTGTACTTTCAACTCTGGCGCCACGGTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTATTCAGCAATACGAACTCTGGAAAGGTTACTTGAAGCTGGATATAAGAGACGCATGTCTGAGCTCTCTAGTGCTTCATTTTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATTGTCTTTCAGAATTTACTATTGGAAACAAATGAAGAGGTTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCATTGTTCAGTGTTCTGTGGAGGACCTGGAGACAGCTGGAATGTCTTACATGACTTCCTGGATAGAACTTGCATCTACACCTTTTGGTTCTGCTTTAGATGCCTCAAAGATGTTTTGGCCTGTTGCATTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCTGTGAGGATTGAAAATGAATATGGCGGAAATCTAGGTCTTGAATCTACAATGTCAACTATTCCACAGGATAGAAATGGAGACGTTCCTACGAATTCTGTCAAGATAATTGTTGGTGCTGAGGTCGACACATCTGTAACTCGTACCCGGGTAGTTACAGCAACTGCTTTGGGAATTTTTGCCTCTAAACTTCCAGAGGGTTCTTTAAAAAATGTTATTGATCCACTGTGGAGTTCAATAACCTCTCTTTCTGGTGTCCAGCGCCAGGTTGCATCTATGATTCTTATTTCTTGGTTCAAGGAGGTTAGGACCAGGAATTTGTCTGAAAGCCTCAATGGTATTCCTGCTTCCCTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCTGCGTTCCCAACAAAAGGTTCACTTATTCCTTATGCCGAGCTTTCAAGAACGTATTCGAAGATGCGTAGTGAGGCTGGTCAATTGCTAAGTGCAGTCAAATCTTCTGCATTGTGTAATGATAGTCCTGCAAATGAATCTTCAAGAAAGAACACTATGGATGATATTGAATCCTCAAAACAGAGGCTTTTGACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACGGTTACATCTGCAGTTGCAGCTGCAGTCGTGTGGATGTCTGAGTTTCCTACTCGTCTCACCCCCATTATTTTGCCTTTGATGGCTTCGATCAGACGAGAACAGGAGGAAATACTGCAAATTAAGTCAGCTGAGGCTCTCGCTGAGCTAATATATCACTGTGTTTCACGGAGACCTTGCCCCAACGATAAATTAATTAAGAATATATGTAGTTTGACTTGCATGGATCCCTCTGAGACCCCTCAAGCTAAATCCATTTGTTCCATAGAGAGTATTGATGACCAAGGTCTTCTGTCTTTCAGAACTCCTGTGACTAAACAGAAGTCAAAGGTGCATGTGCTGACTGGTGAGGATCGATCAAAGGTAGAGGGGTTTATAAGTAGACGGGGATCTGAGCTATCATTGAGGCTTCTGTGTGAGAAGTTCGGTGTTTTGCTCTTTGATAAGCTTCCTAAGCTGTGGGATTGTCTTACTGAGGTTCTTAAGCCGAGCTCCTCCGAATCTCTAATTGCCGCTAATGAAAAGCAAGCTATGGTAGCAATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTCGTGCGATCTATTGCTCCCTTCTTAAGTGAAGAGTTGAAGCCAAAGCTTTTGACACTTCTTTCATCCGTTTTTAAATGTGTGAAGCATTCTCATGTGGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCTCAGTCAATGATGGTGAAAGTCATGGGCGCTGTGGTTGAAAATGCTATCCCTATGCTGGAAGATGCAACGTCAGTTCATGCTCGACAAGGATCCGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTTGGTGTAGAGTTGGTACCTTATGCTCCTCTGCTGGTGGTTCCCCTTTTACGATGCATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGCTTTGCTGCCCTTGTACCTTTACTTCCTTTAGCACGCGGTGTTCCTCAACCAATTGGAATAGGGGAAGGTATATCTAAAAATGCAGAAGATTTGCGTTTTCTGGAGCAGCTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGATATCAACAGGAAGGCATAAATTGGTTAGCTTTTCTGAAACGTTTTAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCGGCAATTGTGGCCTCTGATATAGTTGAGCATCAAACTCAAATCACCAATGAGGATCTTCTGCCATCTTTAATTATTTGCCCGTCAACACTAGTTGGACATTGGGCCTTTGAGATAGAAAAGTATATCGATGTTTCAGTTATATCTAGTCTTCAGTATGCTGGTTCTGCTCAGGATCGAGTGCTTCTTAGAGAGAGTTTTTGCAAGCATAATGTTATTATAACATCATATGATGTTGTCCGGAAAGATATTGATTATTTGGGACAGCAGCTGTGGAACTACTGTATTTTAGATGAAGGACATATAATAAAGAATGCTAAGTCTAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAACATTATGGACTTGTGGTCCCTTTTTGATTTTTTGATGCCTGGGTTTCTTGGAACAGATAGACAGTTCCAAGGCACATATGGAAAACCACTTATAGCTGCAAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCCGGAGCACTTGCCATGGAAGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGAAGGACAAAGGATGAAGTCTTGTCTGATCTGCCTGAGAAAATAATTCAAGACAGATACTGCGATTTGAGCACTGTACAACTTAAACTATACGAACAGTTTTCTGGTTCTCGTGCAAAACAAGAAATGTCATCGATTGTAACAACAAATGAGTCAGCTGCTGCTGAAGGAAGTAGCAGTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCGCTCCAATACTTGCTAAAACTCTGCAGTCATCCATTGCTTGTAATTGGTGGGAAGATTCCAGATTCACTCTCTACCATCCTTTTGGAACTATTTCCTGCTGGCTCTGATGTCATTTCAGAACTTCACAAACTCCATCACTCTCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAATTGATGCTTCAGGTTCTGAGGCTGCTGCTGGCATTGGGCAGCATAGGGTTTTGATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGACACACATGAAAAATGTCACATATTTGCGGCTAGACGGATCAGTTGAGACCGATAAACGGTTTGAAATTGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTGCTTACGACCCATGTGGGCGGGCTTGGTTTGAACCTTACATCTGCAGATACCCTTGTGTTTGTGGAGCATGACTGGAATCCTATGCGCGACCTTCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAGAAAGTAGTTAATGTTCACCGTCTGATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAAGTTTAAAGTGTCAGTGGCTAATGCTGTCATTAATGCGGAAAATGCTAGTTTGAAAACAATGAATACAGATCAGCTGCTTGATTTATTTGCATCAGCAGAAATCCCGAAGAAGGGGTCTTCTGCTGTGAAGAGTTCAGAAGACAACGCTGATGGAGAAATAGGTAGTGGAAAGGGATTGAAAGCAATACTTGGGGGATTGGAGGATCTATGGGACCAATCACAATATACAGAAGAGTACAATTTGAGTCAATTTTTGGCAAAGCTTAATGGTTAA 6048 0.4153 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKLHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAENVKHISLNELISSVVTKMSESGISCSVEDLCAWPYLQAKITGSSFRSFDLNKVLEFGALLASGGQEYDIGSDNIKNPRERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLLAHKSDPYLNGMDHKVFTSCSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAKNTSKDQTKSWCEDGTEASGTQNLTSKGTCPDSVNHSKAFTQVNHDEYGFEHDEDGQWPFSTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKHNPNLGGTSFVELENKNTSNVLKRERDIDLNMQVSADDCVLNMKKPKLEDVSLSTSMDSVMTCSNGGDTENIISSETQGCTLPIDYGNGKFDGSSVDMNVETHYDGLHDANKQPANIADQKGYSDDQKILSGNPNMLRNLPQNCELMNSVKVARSSWLRNCDFLHDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHAALVNETLNILLKMQCSPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHEEMVPKMYKVFKLEDREIENGAGASGDDVEENPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRRMSELSSASFWPSSIFGDTLRIVFQNLLLETNEEVLQCSERVWSLIVQCSVEDLETAGMSYMTSWIELASTPFGSALDASKMFWPVAFPRKSQFRAAAKMRAVRIENEYGGNLGLESTMSTIPQDRNGDVPTNSVKIIVGAEVDTSVTRTRVVTATALGIFASKLPEGSLKNVIDPLWSSITSLSGVQRQVASMILISWFKEVRTRNLSESLNGIPASLKDWLLDLLACSDPAFPTKGSLIPYAELSRTYSKMRSEAGQLLSAVKSSALCNDSPANESSRKNTMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQIKSAEALAELIYHCVSRRPCPNDKLIKNICSLTCMDPSETPQAKSICSIESIDDQGLLSFRTPVTKQKSKVHVLTGEDRSKVEGFISRRGSELSLRLLCEKFGVLLFDKLPKLWDCLTEVLKPSSSESLIAANEKQAMVAIESVSDPQTLINNIQVVRSIAPFLSEELKPKLLTLLSSVFKCVKHSHVAVRLAASRCITSMAQSMMVKVMGAVVENAIPMLEDATSVHARQGSGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGVPQPIGIGEGISKNAEDLRFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIVEHQTQITNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYAGSAQDRVLLRESFCKHNVIITSYDVVRKDIDYLGQQLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQGTYGKPLIAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSTVQLKLYEQFSGSRAKQEMSSIVTTNESAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVIGGKIPDSLSTILLELFPAGSDVISELHKLHHSPKLVALHEILEECGIGIDASGSEAAAGIGQHRVLIFAQHKAFLDIIEKDLFQTHMKNVTYLRLDGSVETDKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANAVINAENASLKTMNTDQLLDLFASAEIPKKGSSAVKSSEDNADGEIGSGKGLKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG 2015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04872 2015 CDD SF2_C_SNF 1769 1911 - -
Vifa2g04872 2015 SMART helicmild6 1814 1900 IPR001650 -
Vifa2g04872 2015 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1790 1950 IPR001650 -
Vifa2g04872 2015 MobiDBLite consensus disorder prediction 238 269 - -
Vifa2g04872 2015 FunFam TATA-binding protein-associated factor BTAF1 507 687 - -
Vifa2g04872 2015 CDD DEXHc_Mot1 1422 1654 IPR044078 GO:0005524
Vifa2g04872 2015 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 1011 IPR044972 GO:0003677|GO:0016887|GO:0017025
Vifa2g04872 2015 SMART ultradead3 1418 1612 IPR014001 -
Vifa2g04872 2015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1400 1654 IPR027417 -
Vifa2g04872 2015 FunFam TATA-binding protein-associated factor BTAF1 1169 1380 - -
Vifa2g04872 2015 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1434 1604 IPR014001 -
Vifa2g04872 2015 Gene3D - 4 95 IPR011989 -
Vifa2g04872 2015 Gene3D - 1664 1978 IPR027417 -
Vifa2g04872 2015 MobiDBLite consensus disorder prediction 251 269 - -
Vifa2g04872 2015 SUPERFAMILY ARM repeat 6 1461 IPR016024 -
Vifa2g04872 2015 Gene3D - 1229 1384 IPR011989 -
Vifa2g04872 2015 Gene3D - 507 795 IPR011989 -
Vifa2g04872 2015 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1392 1653 - -
Vifa2g04872 2015 Pfam SNF2-related domain 1440 1736 IPR000330 GO:0005524|GO:0140658
Vifa2g04872 2015 FunFam TATA-binding protein-associated factor 172 1664 1981 - -
Vifa2g04872 2015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1655 1956 IPR027417 -
Vifa2g04872 2015 Pfam Helicase conserved C-terminal domain 1800 1900 IPR001650 -
Vifa2g04872 2015 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Vifa2g04872 2015 Pfam Domain of unknown function (DUF3535) 1019 1205 IPR022707 -
Vifa2g04872 2015 Pfam Domain of unknown function (DUF3535) 781 1007 IPR022707 -
Vifa2g04872 2015 Gene3D - 1395 1653 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04872 Vifa-Chr2 1452680368 1452700297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04872 1417 1955 RAD5 or RAD16-like Gene Family AT1G02670 26.254 8.77e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa2g04872 SNF2_N 7.7e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04872 K15192 - gmx:100777977 3371.25