Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04870 ATGGCTTTTCACTATAATCTCTTGTTCATTTCTTTATTTTTTTGTTCTTTTATTCTTATTCTTCCGAACATAAACTCACTCTCAACTGTTTCAATTTCTGACTCTTCGGATTTCAACCAAACCTTAATTTGTGTCTTACAACAACAACCTCAAAGCAAACAAAAACAAAAACAATCTAATCTCAATTGTACTAGTTTTCCACCTAGTACTATTGCACTTGATGTGAATCCTAATGTTTCATATTCCCAAATTGTTGGTGGAAATGGTTTTCTATGTGCATTAACATCATTATCAAATTCTTCAAATTCAATCTTAGGCTGTTGGAGATTCTCAAACTCTTCAAATTCCACTACTGTTCCCTTTAAACGAATCTATCATGGACCTTTCATTGAAGACATCGATGGCGGAAACTCTCAGGTTTGTGGTCTTGTTAATGCGAAAAACGGTTTTCGCATCGAGTGTTGGCCATGGAAGAGCTTCAGTTCATTCAATTCAAGCTTGAGTTTTTCAAGTATTGCAGCTGGAGATGATTTTGTATGTGGGATAGTAGAAAATGGAAAAGGGAATTTTGTTACTTGCGGAGGAAGTAACAAAGAAGTAGTTGGAAATGAACCGAAGAACGGTGGAAATTATTCGGTAATCGAAGCCGGTTCGAATCATGTTTGTGTGATTTCTAGTGATGGTGGTTTGGATTGTTGGGGTGATGTGGTTGGTGAGAAGCCCAAAGGGAGATTCATTGGATTGGCTTTGGGAGAGAAGAGAAGTTGTGCTCTTGGGTATGATGGATTAGTTGAATGTTGGGGTTTGAATGGTTTCACCATGCCATTGAGATTAAAAGGGATTTTTTTTGAATCGATTGTGGCTAAAAAAAGTGTTTTTTGTGGTGTTTTAGCTTCTAATTATTCTTTAATTTGTTGGGGGAATGAGGTTTTTGAGGAGTCGAAAAATGCATTCAAGGTGTTTGATAATGTGCTTCCTGGACCTTGTAAGAGTCGATGTCCGTGTGGGCCTTTATCGGATTCTGCTAAGCTTTGTGTCTCGCCGGGTGTCATTTGTAAAGCTTGTTCACCGTTGGTTGAGTTTTCATCGTCGCCACCGTTCAATCCTCCGTCTACGGTGGTTGGAAATTCGTCGAAAAATGGTACTTGGAGTGTCAAAATGGTGGCGTTTCTCGTGATCGGATGCGTTGGATGTAGTTCATTGTTACTGGTTTTATCTTGCTATCTTTACAAACACTGCAAAGACTTGGGATGCAAATCTAGAGTTCATGACTCGGGAAGATTAGACGATCATGATCCCGAAACCGAATTAGATCCTCCTCGAGGTATCCCGGTTCTTGAGAAGCGGTTAAGCCATGTAATCAGCATGGGAAACGGAGGGACTCTTTTGCAGGAATTTTCTCTTCAAAAACTAATTCAAGCCACCAACAATTTCTCCGAAGATAACAAAATCGGCGTAGGAAGTTTCGGGTCTGTGTACCATGGAAAACTCGAAGAAGAAGGACTCGAAGTTGCAATAAAAAGAGCTGAAATGTCATCAACTTTGATGTCTTCTGCACATTTCGGTGTCGCGAGAAGACAAGAAGACCAAGACAACGCCTTTGTGAACGAACTCGAATCTTTATCGAGACTCCACCACAAAAACTTGGTAAAACTACTCGGTTTCTACGAAGACAAATATGAGAGAATTTTAGTTTACGAATACATGAACAACGGAAGCTTAAACGAACATCTCCATAAATTTCAAACCTCGAATATCATGTCATGGCGCGTTCGTATAAAAGTCGCCTTAGACGCGGCTAGAGGTATAGAATATCTACACAGATACGCAACACCGTCGATCATTCACCGTGACATTAAATCATCAAATATTTTACTAGACTCAAAATGCGTCGCAAAAGTTTCAGATTTTGGGCTATCATTAATAGGCCCGGAAGACGAACAGTCACATCTCTCGCTTCTAGGGGCCGGAACCGTTGGTTACATGGACCCCGAATACTATAGACTACAACATTTAACAACAAAAAGCGATGTCTATAGTTTCGGAGTTGTTTTATTAGAACTTTTAAGTGGTTACAAAGCCATACATAAAAATGAAAATGGAGTGCCAAGAAATGTGGTTGATTTTATTGTACCATTTATAGTTCAAGATGAGATTCATAGAGTTTTGGATCCAAAGTTGCCACCACCAACACCATTTGAGATTGAAGGTGTGGCTTTTGTAGGTTATTTGGCTTGTGATTGTGTTCGTTTGGAAGGGAGAGATAGACCAAATATGAGCCATGTTGTGAGTAGTTTGGAAAAAGCTCTTGAGGCTTGTTTGGCAGAACCTATTCTTTGTGGGTCCAATTCTACTACCACAGTTTCTTCTTATGAGTGA 2379 0.3951 MAFHYNLLFISLFFCSFILILPNINSLSTVSISDSSDFNQTLICVLQQQPQSKQKQKQSNLNCTSFPPSTIALDVNPNVSYSQIVGGNGFLCALTSLSNSSNSILGCWRFSNSSNSTTVPFKRIYHGPFIEDIDGGNSQVCGLVNAKNGFRIECWPWKSFSSFNSSLSFSSIAAGDDFVCGIVENGKGNFVTCGGSNKEVVGNEPKNGGNYSVIEAGSNHVCVISSDGGLDCWGDVVGEKPKGRFIGLALGEKRSCALGYDGLVECWGLNGFTMPLRLKGIFFESIVAKKSVFCGVLASNYSLICWGNEVFEESKNAFKVFDNVLPGPCKSRCPCGPLSDSAKLCVSPGVICKACSPLVEFSSSPPFNPPSTVVGNSSKNGTWSVKMVAFLVIGCVGCSSLLLVLSCYLYKHCKDLGCKSRVHDSGRLDDHDPETELDPPRGIPVLEKRLSHVISMGNGGTLLQEFSLQKLIQATNNFSEDNKIGVGSFGSVYHGKLEEEGLEVAIKRAEMSSTLMSSAHFGVARRQEDQDNAFVNELESLSRLHHKNLVKLLGFYEDKYERILVYEYMNNGSLNEHLHKFQTSNIMSWRVRIKVALDAARGIEYLHRYATPSIIHRDIKSSNILLDSKCVAKVSDFGLSLIGPEDEQSHLSLLGAGTVGYMDPEYYRLQHLTTKSDVYSFGVVLLELLSGYKAIHKNENGVPRNVVDFIVPFIVQDEIHRVLDPKLPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMSHVVSSLEKALEACLAEPILCGSNSTTTVSSYE 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04870 792 SUPERFAMILY Protein kinase-like (PK-like) 457 766 IPR011009 -
Vifa2g04870 792 Gene3D Phosphorylase Kinase; domain 1 455 568 - -
Vifa2g04870 792 ProSitePatterns Protein kinases ATP-binding region signature. 484 507 IPR017441 GO:0005524
Vifa2g04870 792 Gene3D Transferase(Phosphotransferase) domain 1 569 776 - -
Vifa2g04870 792 Gene3D - 51 324 IPR009091 -
Vifa2g04870 792 SUPERFAMILY RCC1/BLIP-II 73 310 IPR009091 -
Vifa2g04870 792 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 88 776 IPR044815 GO:0004674
Vifa2g04870 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Vifa2g04870 792 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 569 775 - -
Vifa2g04870 792 ProSiteProfiles Protein kinase domain profile. 478 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04870 792 SMART serkin_6 478 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04870 792 Pfam Protein kinase domain 479 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04870 Vifa-Chr2 1451951082 1451953460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04870 26 777 Receptor kinase-like Gene Family AT5G47850 50.065 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vifa2g04870 Pkinase 3.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04870 - - pvu:PHAVU_011G003100g 934.865