Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04869 ATGGCCAAAACTTCCAATTTCTCCCATCTTTTCAACTTCATGTCAATTTTGTTACTCATTTTCCCTCCATGTGAATCTCAAACAACCGAAACACAAGCACTTCTTCAATTCAAAGATCATTTAACCGATTCATTGAACACATTAGCTTCATGGAATAATTCAAACACTCCATGCAACTTTCATGGAATCACATGTGATCCATCATCCTTCAAAGTCATAGAAATCTCCTTAGATGATAACTCCCTCTCGGGCGAAATTTTTCAATCAATATCAATTCTTCACAGCCTGCAAGTCCTTTCACTTCCATCCAACTCCATTTCCGGAAAACTTCCACTAGAAGTAACCGAATTCACACACCTAAGAGTCTTGAATTTATCCGGAAACGAACTGGTTGGTTCGATTCCAGATTTTTCTGGACTAAGAAACCTTCGTGTGCTTGATCTTTCTGCGAACTTTTTCACCGGTCGAATCCCTGGCTGGATAGGGAATCTAACCGGACTAGTTTCGCTCGGCCTCGGAGAAAATCTTTACACGGGAAGTGTGATTCCCAAGAGTCTTGGAAACTTGAAGAACTTGACATGGCTTTACCTTGGTGGTGCACATTTGGTTGGAGAGATTCCAGAATCATTGTATGAACTGGAAGCATTAGAGACTTTGGATTTGTCAAGAAACAAGCTATCTGGCGAAATCTCTAGATCGATTTCGAAGCTGAAGAATGTTTACAAAATCGAGTTGTTTTCGAACAATTTGACCGGAGGAATACCGGAAGAAGTTGCGAATTTAACCAATTTGCAAGAGATTGATATTTCTGCAAACAACCTGTTTGGTGAATTGCCTAAGAGAATAGGTGATATGGTGAATTTGGCTGTTTTTCAGCTCTATGATAACAATTTCTCTGGTGAGATTCCTGTTGGATTTGGTGATATGGAAAATCTCAGAGGCTTTTCGGTTTACAGAAACAGTTTCACCGGTTCGATTCCGGAGAATTTCGGCCGATTTTCTCCGCTCGAAAGCATCGATGTGTCTGAGAATCAGTTTTCAGGTTTTTTCCCAAAGTACTTGTGTGAGAAGCAAAAGTTGACAATTCTGCTAGCATTGCAAAACAATTTCTCTGGTAATATTTCAGATTCTTATGCTTCATGCAAATCATTAGAGAGATTGAGGGTCAGTAGGAATTTTTTGTCTGGAAACATTCCGAATGGTGTTTGGTCGCTTCCGAATGCGAAGATAATTGATCTCGGGTTTAACAATTTCAGTGGTAAAGTTTCTTCTCAGATTGGTAACTCAACAAATTTAACTGAGGTTGTTTTGATGAACAACAAGTTTTCTGGTAAGGTTCCCTCGGAAATCGGAAAATTGGTGAATTTGGAGAAACTTTACTTGAGTAACAACAATTTCTCTGGTGAAATTCCTCATGAAATTGGATTTTTGAAACAGTTATCCACTTTGCATTTGGAGGAAAATTCCTTAACTGGTTTGATACCTAAAGAGTTAGGCCATTGCTCAAGGCTTGTGGACTTGAATTTTGCATTGAATTCTCTATCAGGTAATATTCCGAGCTCGGTTTCGCTTATGAGTTCGTTGAATTCGTTGAATTTGTCTCGAAACAAGTTGACAGGTTCGATTCCTGATAATTTGGACAAAATGAAACTAAGTTCAGTTGATTTTTCTTATAATCTGCTTACTGGCGGAATTCCGTTTGGGATACTTGTCATCGGCGGAGAGAAAGCTTTTGCTGGAAACAAAGGTTTATGTGTTGAGAAAATTCCGAGCAGTAAGATAAATTCGGCTTTGAAGATTTGTGGTAATGATCGTGGTCGTAGAAGAGCTTTCTTTGGTTATAAATATATATTGCTCTTGGTCATTGCTGTCATCTTCGTCGCTGCGGTTTTGATATGTAGAAGCGTGAGGATTCGAAGAGCGAAAAAGATACTAAAATGTCAGAAGGAAGCGAGTCAGAGAAAATGGAAACAAGCATCTTTTCACAAAGTGGATATTGATGCTGATGAAATATGTAATTTGAATGAAGATAATTTGATCGGCCACGGTGGTACGGGAAAGGTTTATCGAGTCGCGTTGAAGAAAAACGGAATGGTAGTGGCCGTGAAGCAGCTAGAGAAAAGCGACGGTATGAGGATTTTAGTTGCGGAAATGGAGATTTTAGGGAAGATTAGGCATAGAAATATACTTAAATTGTATGCTTGTTTTCTCAAAGGAGGAACCAATCTTTTGGTTTTTGAGTATATGCCAAATGGTAATCTTTTTGAAGCTCTTCATAGAAATGTAAAAGATGAGAAGGTTGCATGGGATTGGAATCAGAGGTATAAAATCGCGTTGGGAGGTGCAAAAGGGATTTGCTATTTGCACCATGATTGTTGTCCATCGGTTATTCATAGGGATATAAAATCGAGCAACATCTTGCTTGATCAAGAATATGAGGCGAAAATTGCTGATTTTGGTGTTGCAAGGTTTGCTGAACAAACTCAGACGGGTCTTAGCTATTTTGCTGGTACACATGGTTATATTGCTCCAGAACTTGCGTATTCAACTGAAGTAACTGAAAAAAGCGATGTGTACAGCTTCGGAGTAGTACTGTTAGAGTTAGTATCGGGAAGAAAAGCTGTTGAAGAAGAATACGGAGACGCAAAAGACATTGTTTATTGGGTTCTGAGTAATCTGAATGAGCGCGAAAGTGTAATCAACATTCTTGATGCGAGGGTTGCATCAGCACATTGTGTTGACGATATGATAAAAGTGTTGAAAATTGCTATTAAGTGCACTAATAAACTTCCGACATTGCGTCCTACAATGAGAGATGTTGTTAAGATGCTTATTGCTTCTGAACCTTGCAAGAAGAAATCTAAAAGGCACGGTTTTGAGAAAGATTTAATGTCTAAAGCTACAATTTGA 2910 0.3876 MAKTSNFSHLFNFMSILLLIFPPCESQTTETQALLQFKDHLTDSLNTLASWNNSNTPCNFHGITCDPSSFKVIEISLDDNSLSGEIFQSISILHSLQVLSLPSNSISGKLPLEVTEFTHLRVLNLSGNELVGSIPDFSGLRNLRVLDLSANFFTGRIPGWIGNLTGLVSLGLGENLYTGSVIPKSLGNLKNLTWLYLGGAHLVGEIPESLYELEALETLDLSRNKLSGEISRSISKLKNVYKIELFSNNLTGGIPEEVANLTNLQEIDISANNLFGELPKRIGDMVNLAVFQLYDNNFSGEIPVGFGDMENLRGFSVYRNSFTGSIPENFGRFSPLESIDVSENQFSGFFPKYLCEKQKLTILLALQNNFSGNISDSYASCKSLERLRVSRNFLSGNIPNGVWSLPNAKIIDLGFNNFSGKVSSQIGNSTNLTEVVLMNNKFSGKVPSEIGKLVNLEKLYLSNNNFSGEIPHEIGFLKQLSTLHLEENSLTGLIPKELGHCSRLVDLNFALNSLSGNIPSSVSLMSSLNSLNLSRNKLTGSIPDNLDKMKLSSVDFSYNLLTGGIPFGILVIGGEKAFAGNKGLCVEKIPSSKINSALKICGNDRGRRRAFFGYKYILLLVIAVIFVAAVLICRSVRIRRAKKILKCQKEASQRKWKQASFHKVDIDADEICNLNEDNLIGHGGTGKVYRVALKKNGMVVAVKQLEKSDGMRILVAEMEILGKIRHRNILKLYACFLKGGTNLLVFEYMPNGNLFEALHRNVKDEKVAWDWNQRYKIALGGAKGICYLHHDCCPSVIHRDIKSSNILLDQEYEAKIADFGVARFAEQTQTGLSYFAGTHGYIAPELAYSTEVTEKSDVYSFGVVLLELVSGRKAVEEEYGDAKDIVYWVLSNLNERESVINILDARVASAHCVDDMIKVLKIAIKCTNKLPTLRPTMRDVVKMLIASEPCKKKSKRHGFEKDLMSKATI 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04869 969 ProSitePatterns Protein kinases ATP-binding region signature. 680 703 IPR017441 GO:0005524
Vifa2g04869 969 FunFam Receptor-like protein kinase HSL1 287 593 - -
Vifa2g04869 969 SMART LRR_typ_2 525 549 IPR003591 -
Vifa2g04869 969 SMART LRR_typ_2 117 139 IPR003591 -
Vifa2g04869 969 SMART LRR_typ_2 477 500 IPR003591 -
Vifa2g04869 969 SMART LRR_typ_2 261 285 IPR003591 -
Vifa2g04869 969 SMART LRR_typ_2 213 237 IPR003591 -
Vifa2g04869 969 SMART LRR_typ_2 140 164 IPR003591 -
Vifa2g04869 969 SMART LRR_typ_2 453 475 IPR003591 -
Vifa2g04869 969 SMART serkin_6 674 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04869 969 Pfam Leucine Rich Repeat 216 237 IPR001611 GO:0005515
Vifa2g04869 969 Pfam Leucine Rich Repeat 455 477 IPR001611 GO:0005515
Vifa2g04869 969 SUPERFAMILY RNI-like 243 563 - -
Vifa2g04869 969 ProSiteProfiles Protein kinase domain profile. 674 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04869 969 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Vifa2g04869 969 Gene3D Ribonuclease Inhibitor 237 308 IPR032675 -
Vifa2g04869 969 Gene3D Ribonuclease Inhibitor 181 236 IPR032675 -
Vifa2g04869 969 FunFam Leucine-rich receptor-like protein kinase family protein 183 280 - -
Vifa2g04869 969 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 749 961 - -
Vifa2g04869 969 Pfam Protein kinase domain 676 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04869 969 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Vifa2g04869 969 Gene3D Transferase(Phosphotransferase) domain 1 749 966 - -
Vifa2g04869 969 FunFam Probable inactive receptor kinase RLK902 27 182 - -
Vifa2g04869 969 Gene3D Ribonuclease Inhibitor 26 180 IPR032675 -
Vifa2g04869 969 Gene3D Ribonuclease Inhibitor 309 596 IPR032675 -
Vifa2g04869 969 PRINTS Leucine-rich repeat signature 216 229 - -
Vifa2g04869 969 PRINTS Leucine-rich repeat signature 525 538 - -
Vifa2g04869 969 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 213 945 - -
Vifa2g04869 969 FunFam Leucine-rich receptor-like protein kinase family protein 664 748 - -
Vifa2g04869 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672|GO:0006468
Vifa2g04869 969 Gene3D Phosphorylase Kinase; domain 1 635 748 - -
Vifa2g04869 969 SUPERFAMILY L domain-like 26 288 - -
Vifa2g04869 969 Pfam Leucine rich repeat 141 201 IPR001611 GO:0005515
Vifa2g04869 969 SUPERFAMILY Protein kinase-like (PK-like) 672 944 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04869 Vifa-Chr2 1451294933 1451298105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04869 15 955 Receptor kinase-like Gene Family AT1G72180 53.410 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa2g04869 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04869 - - gmx:100789704 1315.44