Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04865 ATGACTCCAATTAACTTGGCTGGACAGTTTGGTGACACCACATACACCAAGGTTTTTGTCGGAGGTTTAGCTTGGGAAACTCAGAAAGAAACCATGAAGAAGTATTTTGAACAATTTGGTGAGATCTTGGAAGCTGTTGTCATCACTGATAAAGCCACCGGAAGATCCAAAGGCTATGGATTTGTTACTTTTCGTGAACCTGATGCTGCTATGAGAGCTTGTGTTGATGCTGCTCCTATAATTGATGGAAGAAGAGCTAATTGCAATCTTGCTTCTTTGGGTGTTCAAAGATCTAAGCCTTCAACACCAAAGCATGGAGGAGGAGGAAGAAACTTTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCAGCTTTTCCTTCAGCTGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCCTACTCACCAGATTATAGTTACCCTACGAGCTATTATGGTGTGTATGGTGGAGCAGCAGCACAGTATCCAGTTTATGGAAGTGGTCCAACCGGAGGGATGATGACCGGTGGCGCTGCGGCTGCGGCAGCTTACTATCCATATCTTCAATATGGTGAAGGAACCGGCGGTGCAACGACCGGCGGCTACACTTCCGGGCAAGGTTATGGGGTTAACTATCCACCTCATGTGTTTCAATATTCTCCAATTGCTTCTACTGGTGGTTATGCTCAGCATTATGGAACACCCATTTCTCTTGCTCCTTCTCCTGCTGCCTTGCCATCAGGCGTGACAATGGCTCTTCAAGCTCCAATTCCTCATCGTTAG 822 0.4599 MTPINLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGVGSAFPSAATFPHYAIQQGIPYNVYGYSSYSPDYSYPTSYYGVYGGAAAQYPVYGSGPTGGMMTGGAAAAAAYYPYLQYGEGTGGATTGGYTSGQGYGVNYPPHVFQYSPIASTGGYAQHYGTPISLAPSPAALPSGVTMALQAPIPHR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04865 273 Gene3D - 7 112 IPR012677 -
Vifa2g04865 273 PANTHER BOULE-RELATED 7 241 - -
Vifa2g04865 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Vifa2g04865 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vifa2g04865 273 CDD RRM_RBM24_RBM38_like 16 91 - -
Vifa2g04865 273 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Vifa2g04865 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Vifa2g04865 273 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04865 Vifa-Chr2 1447572876 1447578957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04865 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 1.06e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04865 - - aip:107629746 418.698