Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04861 ATGTCCATCACAAACATATCTCAAGCTTCAGCTTCAGCTTCACCTTCAGCTTCAGCTTCAGCTTCAGCTTCTCCCACCTCCACCACAAAACCCACCACCAAGAACCGTGATTCAACATTCCACGGCGTACGAAAACGAACCTGGGGACGCTATGTTTCAGAAATACGACTCCCGGGTCAGAAAACTCGAATATGGCTTGGTTCTTTCCAGACAGCTGAAATGGCGGCGCGTGCTTATGACTCCGCGGCTTTCTTCTTAAAAGGTACCTCGGCTAGCCTTAATTTCCCCGAAGAGGCTGTATTTTTACCTCGTCCTGGTTCTTCTTCTAGGAAAGATATTCAGTCGGCGGCGGCTAAAGCGGCTCATCAAGGAAGCCGCCGCCAACAACAACAACAATCTTCTTCTTCTTGTTCCATCGAAACAAAAAACGAAAATGAAAATATTATTATTAATAATGATAATAATAATAATATTATTAATAATAATAATAGTAATAATAGTGTCGATGAATTTTCTATTGAGATGATGGAGTTTTGGAATCAAGAAGAATGTGCTTCGACGACGTCGTTTTGGGATATGAAAGATGCTCCTTTAACGAGTCCAACAAGGGTGGGGTCCATTTATGGAGATATGATGACATGGAATGAAGTGTTTGATTTCAATGATGACATTTTAGCCATGGCGCATCCATAA 693 0.4185 MSITNISQASASASPSASASASASPTSTTKPTTKNRDSTFHGVRKRTWGRYVSEIRLPGQKTRIWLGSFQTAEMAARAYDSAAFFLKGTSASLNFPEEAVFLPRPGSSSRKDIQSAAAKAAHQGSRRQQQQQSSSSCSIETKNENENIIINNDNNNNIINNNNSNNSVDEFSIEMMEFWNQEECASTTSFWDMKDAPLTSPTRVGSIYGDMMTWNEVFDFNDDILAMAHP 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04861 230 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Vifa2g04861 230 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Vifa2g04861 230 MobiDBLite consensus disorder prediction 103 140 - -
Vifa2g04861 230 MobiDBLite consensus disorder prediction 121 140 - -
Vifa2g04861 230 MobiDBLite consensus disorder prediction 1 41 - -
Vifa2g04861 230 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Vifa2g04861 230 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Vifa2g04861 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 162 - -
Vifa2g04861 230 Pfam AP2 domain 40 88 IPR001471 GO:0003700|GO:0006355
Vifa2g04861 230 MobiDBLite consensus disorder prediction 1 36 - -
Vifa2g04861 230 SUPERFAMILY DNA-binding domain 38 97 IPR016177 GO:0003677
Vifa2g04861 230 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Vifa2g04861 230 CDD AP2 38 97 IPR001471 GO:0003700|GO:0006355
Vifa2g04861 230 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04861 Vifa-Chr2 1444997666 1444998358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04861 15 114 AP2-EREBP Transcription Factor Family AT1G01250 56.863 1.40e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa2g04861 AP2 3.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04861 K09286 - zju:107409738 161.77