Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04859 ATGGTTTTCAACGAGAGGCCAACTAAGAAGATGAAAAGAAGGGTCACCGCCGATCTTTATGATTTTCTCACTTTCCCTTCCGCCGGCGACACCTCCGACGCTGTACCTTTTCGTAAACGTGTTCATCGTTTTCTCTCTGATCACGCTCGTGTCACTTTTCCTCCCTCTCTTTTCCCTTCTCTGATGACGTGGCAGATCTTGTTTCGTGTTGGGGATATTGTTGATGGCTCTGATCTTTCGTCTGGTGTGGTTACTCTTGACATTGTTGAAGAGGATGTTACTTGTTCTCGTAGTACTGTTTATTGTGACCAGTGCCGAGTTGTTGGATGGAGTGGTCATCCTGTATGTCAAAAGCGATTTCATTTCATAATAAGGTCTGGTAGTGATGCAGTCGAAGCATACCAAAGATCTTGTTCAAAATGTGGAGATCTTCTCCAATTATCTGAAGCAAGGTGTAAGTCATGTGATCTTGACATCTCTGTTGATGATCTGGAGGATTGGGTGTATCTTCAAATTGAAGATAACACACATCTTCTACATGGAGTTGTGCATTCTAATGGTTATGGTCACTTGCTTACCCTTAACGGAAGAGAAGGTGGCTCAATGCTTCTCTCCGGATCTGATTTAATAGGTTTCTGGGATAGGCTCTGTGCTGCGATTTCTGTTAGGAAGGTTAGTGTGATGGACTTGTCCAAGAAATTTGGTCTGGATTATCGTTTGCTTCATGCAATCACCGAAGGGCATTCATGGTATGGCAATTGGGGTTATGAATTTGGAACTGGCTGCTATGGTCTTACCAAAGAAGCATACAAAAAGGCCGTTGATACCTTGTCCAACTTGCCCCTGTCCTCATTTTCGTTCCAGGGTCGAGGACCGCGAAACCGTGTGCAGACTGTTATTTCACTTTACCAGTCTTTTGCAGAAACCGAACTTCTAACAATTAAAGATCTCTTCTCCTTTATGGTGAAATTGGTTCATAAATTTCGTAATCCAAGAAGTGCAAAGACTTCACTACATGAATTTAACTATCCCTGTCATACACTATGTGCGTGGAAGGGAAATGATGTTGAAGATGTGCAACAAGCTTTGATCAAGGTATTGCTGGCATCAAGTGCATGTAATGTGGCCAAATGGGTTACAAGGCGAACTCTGAAGGGGGCCATATGTATGCGAGTTGGGTCCCCAGAGCTGATAGACTATAGTCTTAAGCACTTGCCAGGGAAATTAGCTGCAAATGGAATGGTTGTTTGTTCGCGATGCAATCCGAAATCTTGTGCTGTGGAATTCAGATTGGGACCTTTTACTAATGGATTTACCTCGAATTCAAGCTATCCTTCAGAAGAGCAAGTGATATCTGATTTGACATTTTTATTTAGAACAATTATTCACGCTGAAAAAAAGTTCAGCTACAGACCCAAAAGTATGAGGAAAACGATTGCCGATTCAGCTAGAACTCTTCTTGACTGTAAGCAGTTCATGAAGAATTATGAATCTGATCACGTGAACACAGAATCTCCTTCAAATATGAAGCTCTGGTGTCACGTGGAGCTTTCCGACCAGCCTAAAGAGGACCATCCAACACCACCTCCAGAACTAATTGTGTTGCCTATAGATGCTACTGTTGATGACCTGATGAGTGAAGTCACCAGTGCTTTTCAAGAGGTATATGCAATGTACAAGAAGTTTCAAGCTGAGGAACTTCTAGGATTTGGTAAAATCAACAATTTATACACTCTGAAATTCCTCTTTGGAGAAAGTGTTGCAAGTGTTCAAACTCTAGGAAAATGTCCTACCAAACATGGCCTAAGCCGATTCCGGAAGGAACGCGGAACAGAAGAGTGGAAAGTTGATTGCACTTGTGGTGCTAAGGATGATGATGGAGAAAAAATGTTAGCATGTGATACCTGTGGTGTCTGGCAGCATACCAGATGTGCGGGAATTGGTAGTTCTGCGCCTTCCAAATTTGTATGTAGGGGATGTGTAAACTCTTACCGTGTGAAAACCAAAAAATACCCAGCATCTTCTAGCAAGGCTTGTAAATTGAAAACATCTTGCAGAGATGAAGCAGCTGCAGCGGTCACTTATAATATAAATGTAAATTTTGGTGTACGTTAG 2115 0.4227 MVFNERPTKKMKRRVTADLYDFLTFPSAGDTSDAVPFRKRVHRFLSDHARVTFPPSLFPSLMTWQILFRVGDIVDGSDLSSGVVTLDIVEEDVTCSRSTVYCDQCRVVGWSGHPVCQKRFHFIIRSGSDAVEAYQRSCSKCGDLLQLSEARCKSCDLDISVDDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLNGREGGSMLLSGSDLIGFWDRLCAAISVRKVSVMDLSKKFGLDYRLLHAITEGHSWYGNWGYEFGTGCYGLTKEAYKKAVDTLSNLPLSSFSFQGRGPRNRVQTVISLYQSFAETELLTIKDLFSFMVKLVHKFRNPRSAKTSLHEFNYPCHTLCAWKGNDVEDVQQALIKVLLASSACNVAKWVTRRTLKGAICMRVGSPELIDYSLKHLPGKLAANGMVVCSRCNPKSCAVEFRLGPFTNGFTSNSSYPSEEQVISDLTFLFRTIIHAEKKFSYRPKSMRKTIADSARTLLDCKQFMKNYESDHVNTESPSNMKLWCHVELSDQPKEDHPTPPPELIVLPIDATVDDLMSEVTSAFQEVYAMYKKFQAEELLGFGKINNLYTLKFLFGESVASVQTLGKCPTKHGLSRFRKERGTEEWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIGSSAPSKFVCRGCVNSYRVKTKKYPASSSKACKLKTSCRDEAAAAVTYNINVNFGVR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04859 704 Pfam PHD-finger 618 662 IPR019787 -
Vifa2g04859 704 SUPERFAMILY FYVE/PHD zinc finger 611 668 IPR011011 -
Vifa2g04859 704 CDD PHD_MMD1_like 617 660 - -
Vifa2g04859 704 SMART PHD_3 617 661 IPR001965 -
Vifa2g04859 704 ProSitePatterns Zinc finger PHD-type signature. 618 660 IPR019786 -
Vifa2g04859 704 ProSiteProfiles Zinc finger PHD-type profile. 615 663 IPR019787 -
Vifa2g04859 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 666 IPR013083 -
Vifa2g04859 704 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04859 Vifa-Chr2 1444248349 1444251134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04859 84 660 PHD Transcription Factor Family AT5G22260 27.512 6.92e-79 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g04859 PHD 1.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04859 K26271 - gmx:100780558 1060.44