Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04858 ATGAGTTCTTCTAACGGCGGTGTGCCGCCGGGGTTTCGATTTCATCCGACCGACGAAGAACTACTTCATTACTACTTGAAGAAGAAGCTTTCTTTTCAAAAGTTTGATATGGATGTTATAAGAGAGGTGGATTTGAATAAGATGGAACCTTGGGACTTGCAAGAAAAATGTAAGATTGGATCAACACCTCAAAACGAGTGGTACTTTTTCAGTCACAAGGACAGAAAGTACCCAACAGGGTCAAGGACAAATAGAGCAACAAATGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAATGCATTAGGAATACTTTCAAGAAAATTGGAATGAGAAAGACACTTGTGTTCTACAAAGGTAGAGCTCCTCATGGACAAAAGACTGATTGGATTATGCATGAATATCGCCTCGAAGACGGCAACGATCCTACCAATGAAGATGGATGGGTGGTGTGTAGGGTGTTCAAGAAGAAGAACTTATTCAAGATAGAAAATGAAGGTGGATCCACTCACAATCAAGATCAACAAATGAACAACATGTCCTCTACCAATCCACGCTCCTTCATGCAAAGAGAAAATCAATACTTGTTACATCAACAACAACAACATCAAAACCAGCCTAGGAACCTAACCGGTTTCGAGCTCGAAAAACCCGAGCTAGGTCTCCATTATCAACACTTACAAAACTCTCAATACTCACTGTTCCATTCTCAACCTCAACCACTTCTCCACAGTCAAAAGCATCTCGAGATGAATTTCGACTACTCATACGCAACGTCTTTACCGTCAGAACAACCTATAATAGTTAAACAGCTTATGACAAACCCTAGAGACTGTGAAAGTGGAAGTGATGGTTTGAGATACCAAGTTTCTGAATCTGGTATTGAAGTTGGTTCATGTGAACCACATCAAGAAATAGGTGTTGGAAGGAGTGAAGGAATAAATGAATGGGGTATGCTTGATAGACTAGTGAATGAAGACTCAACAAAAGAGGCCACTAGGTATGAGGATGGGAATCCTCATCAGATGAACCAGCTTTCATTAAGGGGAGAGATGGATTTTTGGGGTTATGGAAAACAATGA 1080 0.4074 MSSSNGGVPPGFRFHPTDEELLHYYLKKKLSFQKFDMDVIREVDLNKMEPWDLQEKCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTFKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPTNEDGWVVCRVFKKKNLFKIENEGGSTHNQDQQMNNMSSTNPRSFMQRENQYLLHQQQQHQNQPRNLTGFELEKPELGLHYQHLQNSQYSLFHSQPQPLLHSQKHLEMNFDYSYATSLPSEQPIIVKQLMTNPRDCESGSDGLRYQVSESGIEVGSCEPHQEIGVGRSEGINEWGMLDRLVNEDSTKEATRYEDGNPHQMNQLSLRGEMDFWGYGKQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04858 359 ProSiteProfiles NAC domain profile. 8 156 IPR003441 GO:0003677|GO:0006355
Vifa2g04858 359 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Vifa2g04858 359 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Vifa2g04858 359 FunFam NAC domain-containing protein 17 160 - -
Vifa2g04858 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 227 - -
Vifa2g04858 359 SUPERFAMILY NAC domain 7 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04858 Vifa-Chr2 1443140418 1443142357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04858 1 355 NAC Transcription Factor Family AT1G33280 53.444 6.45e-124 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g04858 NAM 4.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04858 - - gmx:100804181 570.466