Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04840 ATGTCGTCTAACCCCTTTCCGCCGCCAGAAAAGGATCCACCTCCATCTACACCCTCTCCGGTATCCTCCAAAGCCAACAAACTTCAGAAAACCCCTCACATTCTGAGCCGACGCACCGCCGTCGATGACACGGATGAAGTCGCCGATTTCGCCGAATTCGAAGAGGAAGAAGAGAAAAAAATATACGAGGAAGAAGAATGCGTTGTTCTTCAACGTCATTTCGAACGCGGCGAATCTTCGTCATCTTCTTCTTCTTCCTCCATTTTGCTCGCGTCTTCTTTAGGTCTCAATAGCATCCGAACGCGGTTATCGCCGCTTCGTCATTCTTCTTCCGCTGGTGCTCCGGCATTCGCCATAAAAGAAGCTGCTATTCCTTTCAGTATCAACAATGTCACCAAATCTAGATCCAAATCTTCACATCCGAGAGACCTAGGGGAAAAATTTCATTGGAATCAATCCAAATCGTTGAAAGCTCATCATTCACATCTCCTCCCTGTGCCGGAGAGCAATCATGCAGCTTTTGCGGAAATACAATCCCCACGTTTTCAGGAGATCCTTAGACTTACAAGTCGCAGGCATAAGAGAAACCCTGATATTAAAAGCTTTTCCCATGAACTCAACTCCAAAGGAGTTAGGCCTTATCCAACCTGGAAACATCGTGCCTCTTGGCACGTCGAGGAAGTCATGGTGGAGATTAGAACTAAGTTTGAAAAACTAAAGGAAGAGGTCGATTCTGATTTAGGTGGTTTTGCTGGTGATTTGGTGGGTACTCTTGAAAAAATATCTGGGTCTCCTTGTGAATGGAAAGAGGGGCTGGAAGATTTATTGGTTGTTGCTCAACAATGTGCAACGATGTCAGCTGCTGAGTTTTGGATCAAATGTGAAACTATAGTTCAAAAACTAGACGATAAACGCCAAGAAATACCAGTGGGGATCCTTAAACAAGCTCACACACGCCTGCTGTTTATTCTCTCTAGGTGCACTCGTCTTGTGCAATTCCAGAAGGAAAGTGATCAAAAAGAACAAGATCACGTTCTTAGTCTTCACCAACTCAGTGATCTTGGAGTATATTCAGAGCAAATTTTGAAGGCTGCAGAGAATTGCAGTGTTCCACCCAGTGGACATGAGATGGCTGAGAAGCAGTTAACAAAATCACATGGAAAAGAGCAAGACAAATTGGTAACAAAAAAAAGTCAAGATGACCAACATGCAAGTGCTGCGACTGACAGTGTGGAGGTTACTACAGCTAAAAGTGTTGAGTCAACTCCCAGTAGCTATAAAATGGCTTCTTGGAAAAAGCTTCCATCAGCTGCTGATAAAAAACGCATATGTCATGATGCAGTAGTGAAAGATGAACACGCCGAAACCTTGGATACTTCATGTCAACCTGAACATTCACAAACATCATCTAGAACGCGAAAGGATTCTTGGGGATTCTGGGGAGATCAGCCAAATCTACCATATGATTATTCAATGATCATCTGCAGGATTTGTGAGGTTGAAATACCAATTGTAAGTGTGGAGGAGCATTCTCGTATATGCACAATTGCTGATAAATGTGATTTGAAAGGCTTAACTGTAAATGAACGGCTGGAGAGAGTTTCAGAAACTATTGAAAGGTTACTTGAATCTTGGACACCAAAAAGCACACCTAAAAGCACTGATACTCACGGAGAAAGCTTTGAGTTTGCGAGAGTGTCAACATCGAGTTTACATGAGGAGTTTAATGAGTTGTCTCTAGAAAGAAATAACTTGTCTAGTAGATGCTCTGAAGACATGGCTGACCCTGCCCCTGAACCTGACATTAGTTTTGTTGCAGATGAGCTAAACCTTTCACCTGAAATAACATGTGATACTCAAATCTGCTCAAAACCTGATCATAGCGCCAAGGTATATTCACCTGGAAGCTTGACACCGCGATCACCATTGATTACACCAAGAACAAGTCAGATAGAAATGTTACTAGGCGGAAGAAGACATCTATCTGAACTTGAGAGTTATGACCAGATAAACAAGCTAGTTGAAATTGCTCGTGCTGTTGCAAATGTGAACAACTATGACTACAGTTCTTTGGAGTATATGCTTGAACGTGTGGAAGACCTGAAATACGCAATTCAAGACAGAAAAGAAGATGCACTTATTGTGGAGACTTTTGGTCGACGAATAGAGAAACTTTTGCTGGAGAAATATGCTACCCTTTGTGGGCAAATAGAAGATGAAAAGGTAGACTCATCAAATAGCATGGCTGATGAAGAGAGTTCTGTAGAAGATGATACAGTCCGCAGCCTTCGTGCTAGCCCAATTAATCCTTGTTCTAAGGACAGAACCTCTATTGAAGATTTTGAAATAATAAAACCAATAAGCAGGGGTGCGTTTGGACGAGTTTTTCTTGCCAGAAAAAGAGCAACTGGTGATTTATTTGCTATTAAGGTTCTAAAAAAGGCAGATATGATTCGTAAAAACTCAGTTCAAGATATTTTGGCTGAGCGAGACATCCTTATATCTATTCGAAATCCTTTTGTGGTCCGTTTTTTCTATTCTTTCACATGTAGAGAAAATCTTTATTTAGTTATGGAGTATTTAAACGGTGGGGACCTCTACTCTATGTTGAGAAACCTAGGTTGCTTAGATGAAGATATGGCTCGTGTATATATTGCAGAAGTTGTTCTTGCGTTGGAGTATTTGCATACCCAACATATAATTCACAGAGACTTGAAGCCAGATAACTTATTGATTGGTCAAGATGGTCACATTAAGTTAACAGACTTTGGACTCTCAAAAGTTGGGCTCATCAACAGCACCGATGATTTGTCAGCACCCTCATCTTTCGCTAATGGGTTTTTAGGCGACGATAAACCAAAATCTCGACATGTTTCAAAGAGGGAAGAACGTCAACAACAATCAGTGGTTGGCACTCCAGATTATTTGGCACCCGAAATACTTCTGGGCATGGGACATGGTGCAACTGCAGATTGGTGGTCGGTGGGTGTCATACTTTATGAGCTTCTTGTGGGTGTTCCACCTTTTAATGCAGAACATCCACAGCAAATTTTTGATAACATAATTAACAGAGACATACAATGGCCAAAGTATCCTGAGGAGATCAGCTATGAAGCATATGATTTGATGAATAAATTGTTAATCGAAAACCCAGTACAAAGGTTAGGTACAACAGGAGCTTCAGAAGTTAAAGGCCATGCTTTCTTCAAGGACATTAATTGGGATACGCTAGCAAGGCAAAAGGCTATGTTCATACCATCGACTGAAGCTCTTGATACAAGTTATTTTATGAGCCGCTACATTTGGAATCCAGAGGATGAACACTGTGCTGGAGGTAGTGATTTTGATGACATTACTGAATCTTACAGCAGTGGTTCAGGAAGCGATTCATCGGGTGTAGATGAGGATGAGTGTGGTAGTTTAACAGGATTCGCTCCAGGTTCAAATCTTGTGGGACAATATTCGTTTAGTAACTTCTCATTTAAGAACTTGTCTCAGTTAGTCACTATCAATTATGATGTGGTGTATAAAAACAAAGAATCACCCGATAATTCCAACCCATCTGCTTCGTGA 3573 0.4142 MSSNPFPPPEKDPPPSTPSPVSSKANKLQKTPHILSRRTAVDDTDEVADFAEFEEEEEKKIYEEEECVVLQRHFERGESSSSSSSSSILLASSLGLNSIRTRLSPLRHSSSAGAPAFAIKEAAIPFSINNVTKSRSKSSHPRDLGEKFHWNQSKSLKAHHSHLLPVPESNHAAFAEIQSPRFQEILRLTSRRHKRNPDIKSFSHELNSKGVRPYPTWKHRASWHVEEVMVEIRTKFEKLKEEVDSDLGGFAGDLVGTLEKISGSPCEWKEGLEDLLVVAQQCATMSAAEFWIKCETIVQKLDDKRQEIPVGILKQAHTRLLFILSRCTRLVQFQKESDQKEQDHVLSLHQLSDLGVYSEQILKAAENCSVPPSGHEMAEKQLTKSHGKEQDKLVTKKSQDDQHASAATDSVEVTTAKSVESTPSSYKMASWKKLPSAADKKRICHDAVVKDEHAETLDTSCQPEHSQTSSRTRKDSWGFWGDQPNLPYDYSMIICRICEVEIPIVSVEEHSRICTIADKCDLKGLTVNERLERVSETIERLLESWTPKSTPKSTDTHGESFEFARVSTSSLHEEFNELSLERNNLSSRCSEDMADPAPEPDISFVADELNLSPEITCDTQICSKPDHSAKVYSPGSLTPRSPLITPRTSQIEMLLGGRRHLSELESYDQINKLVEIARAVANVNNYDYSSLEYMLERVEDLKYAIQDRKEDALIVETFGRRIEKLLLEKYATLCGQIEDEKVDSSNSMADEESSVEDDTVRSLRASPINPCSKDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIKVLKKADMIRKNSVQDILAERDILISIRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSMLRNLGCLDEDMARVYIAEVVLALEYLHTQHIIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSSFANGFLGDDKPKSRHVSKREERQQQSVVGTPDYLAPEILLGMGHGATADWWSVGVILYELLVGVPPFNAEHPQQIFDNIINRDIQWPKYPEEISYEAYDLMNKLLIENPVQRLGTTGASEVKGHAFFKDINWDTLARQKAMFIPSTEALDTSYFMSRYIWNPEDEHCAGGSDFDDITESYSSGSGSDSSGVDEDECGSLTGFAPGSNLVGQYSFSNFSFKNLSQLVTINYDVVYKNKESPDNSNPSAS 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04840 1190 MobiDBLite consensus disorder prediction 1 20 - -
Vifa2g04840 1190 SUPERFAMILY Protein kinase-like (PK-like) 778 1099 IPR011009 -
Vifa2g04840 1190 Gene3D Transferase(Phosphotransferase) domain 1 865 1087 - -
Vifa2g04840 1190 ProSiteProfiles AGC-kinase C-terminal domain profile. 1070 1171 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa2g04840 1190 MobiDBLite consensus disorder prediction 379 403 - -
Vifa2g04840 1190 MobiDBLite consensus disorder prediction 944 969 - -
Vifa2g04840 1190 CDD STKc_MAST_like 787 1074 - -
Vifa2g04840 1190 MobiDBLite consensus disorder prediction 460 474 - -
Vifa2g04840 1190 Pfam Protein kinase domain 781 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04840 1190 MobiDBLite consensus disorder prediction 404 419 - -
Vifa2g04840 1190 MobiDBLite consensus disorder prediction 369 419 - -
Vifa2g04840 1190 Gene3D Phosphorylase Kinase; domain 1 779 1096 - -
Vifa2g04840 1190 ProSiteProfiles Protein kinase domain profile. 781 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04840 1190 ProSitePatterns Serine/Threonine protein kinases active-site signature. 900 912 IPR008271 GO:0004672|GO:0006468
Vifa2g04840 1190 FunFam probable serine/threonine protein kinase IREH1 779 869 - -
Vifa2g04840 1190 MobiDBLite consensus disorder prediction 1 42 - -
Vifa2g04840 1190 MobiDBLite consensus disorder prediction 950 964 - -
Vifa2g04840 1190 PANTHER SERINE/THREONINE-PROTEIN KINASE 471 1127 - -
Vifa2g04840 1190 SMART serkin_6 781 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04840 1190 MobiDBLite consensus disorder prediction 454 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04840 Vifa-Chr2 1437102290 1437119575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04840 77 1189 AGC Kinase Gene Family AT5G62310 62.642 0.0 1363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vifa2g04840 Pkinase 4.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04840 - - gmx:100817975 1690.63