Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04816 ATGGTGATGAGAGAGATGCGAAAGTCCTTCAAGGATTCTCTCAAAGCTCTTGAAGCTGATATTCAATTTGCCAATACTCTAGCTTCTGATTATCCAAGAGGAAATGATGGAGTCTGCTTTCAAATGAGACTGTCTTATAGCTCAACTGCTCAGTTTCTTCTTTTTCTGGTTCAGTGGACTGATTGCCATCTCGCCGGATTCTTAGGATTGCTTAGAATTCTCATCTCCGAGGCATATGATGAAGGGAAGAAAACCACCATTTATGAAAGAAAAGCTAGTCTAAAGGAGTTCTATGGTGTGATCTTTCCGTCTTTATTACAACTCAAGGGAGGAATCACTGAGGTGGAAGAGAGGAAACAAAAAGATTTATGCGCTACGAAGTACAAACTGAAAGATGTGATTAGAAAAGGAAATCCATCGGAAATTGATATAGAGAGAGAAGAAGAATGTCCTATTTGTATGGAGATGAACAACAAATTTGTGTTGCCAAATTGCAACCATTCTTTGTGTATGAAATGCTATAATCACTGGTACACAAGATCTCGATCATGCCCTTTTTGCCGGGACAATCTTAAGAGACTAAATTCTGGTGAGCTTTGGATCTACTTGAGCAGCAGGGAGATAATTGATTTGGAATCAATCAACAAGGAGAATCTGAAAAGGTTATTTATGTACATTGATAAATTACCTCTGATTTTGCCGGATCAAATATTCATGTCTTATCCTCAAAGCTTTTAA 738 0.3794 MVMREMRKSFKDSLKALEADIQFANTLASDYPRGNDGVCFQMRLSYSSTAQFLLFLVQWTDCHLAGFLGLLRILISEAYDEGKKTTIYERKASLKEFYGVIFPSLLQLKGGITEVEERKQKDLCATKYKLKDVIRKGNPSEIDIEREEECPICMEMNNKFVLPNCNHSLCMKCYNHWYTRSRSCPFCRDNLKRLNSGELWIYLSSREIIDLESINKENLKRLFMYIDKLPLILPDQIFMSYPQSF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04816 245 SMART ring_2 150 187 IPR001841 -
Vifa2g04816 245 ProSitePatterns Zinc finger RING-type signature. 165 174 IPR017907 -
Vifa2g04816 245 FunFam RING/U-box superfamily protein 131 197 - -
Vifa2g04816 245 Pfam Zinc finger, C3HC4 type (RING finger) 147 192 - -
Vifa2g04816 245 PANTHER RING FINGER PROTEIN 41, 151 8 241 - -
Vifa2g04816 245 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
Vifa2g04816 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 217 IPR013083 -
Vifa2g04816 245 SUPERFAMILY RING/U-box 140 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04816 Vifa-Chr2 1430071047 1430072874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04816 94 192 C3H Transcription Factor Family AT5G01960 31.731 2.24e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04816 K25840 - zju:107430836 376.711