Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04811 ATGACAATCATGATGAGAAAAACATTGTTAACACTATTATTGTTATCATCAATTTTCTCAATAGCCAACTCATCAAAAAGAAGATCAAGATCTTCCAACAACAACATAGATTGGTGGTGTAACCAAACACCACACCCAGAACCATGCAAATACTACACAAAACAAACCCATTACTATCACAACAAAAACATCAAACACAAATCAAAATTCAGAGAAATTCTCATCCATCTAGCATTAGAAAGAGCAGTGATCATGCGAAACACAGCACGCGAATTCGGAAGAAACAACTTGATCATAAACAAGAAACAAAAAACCGTGTCACGTGACTGTTTGAAACTCTACGACAACACAGTTTTTCACCTCAACCGAACATTCTCAAATCTCCATGTCAAAAAAACATGTTCTTCATTCGATGCACAAACATGGTTAAGCACTGCTTACACAAACATCGAAACATGTAGAAACGGGGCATTAGATTTAAACATTCCGAAATTCATCACACCAATTATGAAAGTAAACATGACAGAGATCATTAGCAATGGTTTATTCATCAACTGGGAGTTTGTTAAACGCGACGGGCATGCTCGTTACACAGACGATGTTACTGATGAGGCGTTTCCGATATGGTTTTCGGTTCGGGAGAGGAAACTTCTGGAAAGTTCGAGGGCTATTAAGGCGAATCTAGTTGTTGCGAAAGATGGTTCGGGGCATTTTAGGAGAGTTCAAGATGCTATAAATGCTGCGGGGAGGAGAAGGTTTAAGACGAGATTTGTTATACGTGTGAAGAGAGGTGTTTATAGAGAGAATATTGAGGTTGGGAAGATGAATGATAATATTATGTTGGTTGGTGATGGAAGTAGGAATACGGTAATCACAAGTAATAGAAATGTTAAAGCTGGATTTACTACATATAGTTCTGCCACTGCAGGAATTGATGGTCTTCACTTCATTGCACGCGACATTACATTTGAAAACACTGCAGGACCTCATAGAGGTCAAGCAGTGGCGCTACGATCGGCCTCTGACCTCTCTGTCTTTTACCGTTGTGCTTTTAAAGGCTATCAAGACACTCTAATGGTTCACGCGCAACGTCAATTTTTCAGAGAATGTTACATCTATGGCACTGTCGACTTTATCTTTGGCAATGCAGCTGTAGTTTTTCAAAATTGCATGATTCTTGTAAGAAGACCTCTAAACGGCCAAGCAAACATGATCACGGCCCAAGGTCGAGATGACCCATTTCAAAATACTGGAATCTCAATTCATAATTCTCAGATTAGGGCCGCGCCAGACTTCAAACCCGTTGTTGGGAGATTCAATACCTTCTTGGGCCGACCTTGGCAAAGATACTCTAGAGTTGTGGTTATGAAATCATTCATGGATAATTTGGTAAGCCCAATGGGTTGGTCTCCGTGGGGAGGCACTAATTTTGCACAAAGCACTCTATTTTATGGAGAATATAATAACTTTGGGCCGGGCTCATCAACAAGAAATAGAGTAAGGTGGCCTGGTTATCAAGTTATGAAAAGCCCAGCCCAAGCATTGCCATTTACTGTTAATAGCCTCCTTGCTGGTGCCACATGGTTACCTTCCACTGGTGTACCATTCACTTCTGGCCTTTAA 1623 0.4054 MTIMMRKTLLTLLLLSSIFSIANSSKRRSRSSNNNIDWWCNQTPHPEPCKYYTKQTHYYHNKNIKHKSKFREILIHLALERAVIMRNTAREFGRNNLIINKKQKTVSRDCLKLYDNTVFHLNRTFSNLHVKKTCSSFDAQTWLSTAYTNIETCRNGALDLNIPKFITPIMKVNMTEIISNGLFINWEFVKRDGHARYTDDVTDEAFPIWFSVRERKLLESSRAIKANLVVAKDGSGHFRRVQDAINAAGRRRFKTRFVIRVKRGVYRENIEVGKMNDNIMLVGDGSRNTVITSNRNVKAGFTTYSSATAGIDGLHFIARDITFENTAGPHRGQAVALRSASDLSVFYRCAFKGYQDTLMVHAQRQFFRECYIYGTVDFIFGNAAVVFQNCMILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDFKPVVGRFNTFLGRPWQRYSRVVVMKSFMDNLVSPMGWSPWGGTNFAQSTLFYGEYNNFGPGSSTRNRVRWPGYQVMKSPAQALPFTVNSLLAGATWLPSTGVPFTSGL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04811 540 Pfam Pectinesterase 227 525 IPR000070 GO:0030599|GO:0042545
Vifa2g04811 540 Gene3D - 221 540 IPR012334 -
Vifa2g04811 540 PANTHER PECTINESTERASE 18 530 - -
Vifa2g04811 540 Pfam Plant invertase/pectin methylesterase inhibitor 35 182 IPR006501 GO:0004857
Vifa2g04811 540 SUPERFAMILY Pectin lyase-like 222 539 IPR011050 -
Vifa2g04811 540 CDD PMEI-like_3 38 185 - -
Vifa2g04811 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 187 IPR035513 -
Vifa2g04811 540 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Vifa2g04811 540 SMART PMEI_2 31 184 IPR006501 GO:0004857
Vifa2g04811 540 NCBIfam pectinesterase inhibitor domain 8 180 IPR006501 GO:0004857
Vifa2g04811 540 FunFam Pectinesterase 221 540 - -
Vifa2g04811 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 185 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04811 Vifa-Chr2 1427433011 1427436022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04811 21 540 Carbohydrate Esterase AT3G47400 56.874 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04811 K01051 - gmx:100807908 821.231