Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04805 ATGGAAACTTTCTCTCACGTTCCCCCAGGTTTTAGGTTCCATCCCACAGATGAGGAACTTGTTGATTACTACCTAAGAAAAAAAATAGCTTCTAGAAGGATTGATCTTGATGTCATAAAAGATGTTGACCTTTACAAAATTGAACCATGGGATCTTGTAGAGCTTTGTAGGATAGGAGCAGAAGAACAAAATGAATGGTACTTTTTTAGCCATAAAGATAAGAAGTATCCAACAGGGACAAGAACAAATAGGGCAACTGCAGCTGGATTTTGGAAAGCAACTGGAAGAGACAAGGCAATTTATAGTAAGCATGATTTGATAGGGATGAGGAAAACATTGGTGTTTTATAAAGGTAGAGCTCCAAATGGACAAAAGTCAGATTGGATAATGCATGAGTATAGGCTTGAGTCAGATGAAAATGGTGCACCACATGAAGAAGGATGGGTTGTATGTAGAGTATTCAAGAAGAGAATAACAACAACACATCGCAAAATGAATGAACATGACTCTCCTTGTTGGTATGATGATCAAGTTTCTTTCATGCAAGACATGGACTCACCAAATCAAACCTCTCGACCAAATTTAATTTACCAACAACTTCCATATCCTTGCAAAAAAGAGCTAGATAATTCACAGTACCAAAACCTTCCTCGAGACCATTTTCTTAATCTCCCTCTTCTAGAGAGTCCAAAGCTTCCTCAATCTAATCCAATGGTGACAACGTATGGTAATATAGATCTTACAAATTCCATGCTTCCTTCACCAATGCTACTACAAGAAGAACATGTCTTGCAATCTAATCAACAACAAAACTTCCATGCTATGTTTGGAAACAATTCTGATGTCGATGATCAAGTTACCGATTGGAGAGTTCTTGACAAGTTTGTTGCCTCACAACTTAGTCAAGATGCCACAAAAGAAAATGATGACAACATCTTTCATGGCAATGTAGAGTTCAGAAATTTGGAGAAACAAGAAATGGTGCCTCATGAAAATGCCTCAACATCAAACTCAAGTTGTCCTATTGATTTATGGAAATAG 1041 0.3737 METFSHVPPGFRFHPTDEELVDYYLRKKIASRRIDLDVIKDVDLYKIEPWDLVELCRIGAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGAPHEEGWVVCRVFKKRITTTHRKMNEHDSPCWYDDQVSFMQDMDSPNQTSRPNLIYQQLPYPCKKELDNSQYQNLPRDHFLNLPLLESPKLPQSNPMVTTYGNIDLTNSMLPSPMLLQEEHVLQSNQQQNFHAMFGNNSDVDDQVTDWRVLDKFVASQLSQDATKENDDNIFHGNVEFRNLEKQEMVPHENASTSNSSCPIDLWK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04805 346 MobiDBLite consensus disorder prediction 327 346 - -
Vifa2g04805 346 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Vifa2g04805 346 MobiDBLite consensus disorder prediction 328 346 - -
Vifa2g04805 346 FunFam NAC domain-containing protein 16 160 - -
Vifa2g04805 346 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vifa2g04805 346 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vifa2g04805 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 261 - -
Vifa2g04805 346 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04805 Vifa-Chr2 1423469229 1423472006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04805 1 346 NAC Transcription Factor Family AT1G12260 55.946 4.47e-129 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g04805 NAM 5.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04805 - - gmx:100815845 535.413