Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04802 ATGGACATGAATTCGAATAATACTCCTGTTCTCACGGATACCTCTCCGATAACAAATTCTAGGCTACACGTGCATTCCAATTTGTTGCCTTATTCCCATACCGGTGCAACCTTTTCACACGGTATGCTATTGAATATCCCAAGGAAGAAGACGAGAATTCCCGAAGACGTTCTTTCTTGCAATTGGTTGGATGCCATGAAATCATCTTCACCTCCACCGAAGAATGTAACTAAGGATGTTAATCACGGGTTTGCATCATCTGAAACTGATCCTTATTTTAACTGGCTGCTAAAATATCCATCAGCGCTTTCATCTTTTGATCAAATTACAAACTACGCAAAAGGCAAAAGAATTGCATTGTTTTTGGACTATGATGGAACTCTTTCACCAATTGTGGATAACCCTGACTGTGCCTTCATGTCGGAGAATATGCGTGCTGCTGTTAAAAAGGTGGCCGAGTATTTTCCAACCGCAATAATTAGTGGAAGAAGTCGTGACAAGGTGCATGAATTTGTAGGACTAACCGAGCTCTATTATGCTGGTAGTCATGGAATGGACATAATCGGCCCTGTTAGACAATCTCTATCTGTATCACTTAAGCAGGGAAAAAAGGTTAATTTATTCCAACCTGCTGCTGAGTTCCTTCCTATGATTAATGAGGTTTTGAAGTCTCTCATCGAGTGTACAAAAGACATCAAAGGATCAAAAATCGAGAACAATAAATTTTGTGTATCTGTTCATTACCGCAATGTAGACGAGAAGAGTTGGGATTTGGTGGGGCGACGAGTTAATGATGTTCTCAAGGGCTTTCCACGTTTGCGGTTAACTCATGGTCGCAAGGTTTTAGAGGTCCGGCCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTTTTACTCGAGTCACTCGGACTTAACAATTGTGACGATGTGCTTCCTATTTATATCGGCGACGATCGAACAGACGAAGATGCGTTTAAGGTTTTGAGAGAGGGAAATAAAGGTTACGGGATATTAGTCTCTTCGGCACCAAAGGAAAGCAACGCAATTTACTCTCTTCGTGATCCGTCCGAGGTGATGGAATTTCTGAAGTCGCTTGTGGTTTGGAAGACAAGTCCCTTAAAAAGCCATATATAG 1137 0.4169 MDMNSNNTPVLTDTSPITNSRLHVHSNLLPYSHTGATFSHGMLLNIPRKKTRIPEDVLSCNWLDAMKSSSPPPKNVTKDVNHGFASSETDPYFNWLLKYPSALSSFDQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSENMRAAVKKVAEYFPTAIISGRSRDKVHEFVGLTELYYAGSHGMDIIGPVRQSLSVSLKQGKKVNLFQPAAEFLPMINEVLKSLIECTKDIKGSKIENNKFCVSVHYRNVDEKSWDLVGRRVNDVLKGFPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPSEVMEFLKSLVVWKTSPLKSHI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04802 378 Pfam Trehalose-phosphatase 121 357 IPR003337 GO:0003824|GO:0005992
Vifa2g04802 378 FunFam Trehalose 6-phosphate phosphatase 217 376 - -
Vifa2g04802 378 CDD HAD_TPP 119 361 - -
Vifa2g04802 378 NCBIfam trehalose-phosphatase 115 367 IPR003337 GO:0003824|GO:0005992
Vifa2g04802 378 SUPERFAMILY HAD-like 119 368 IPR036412 -
Vifa2g04802 378 Gene3D - 209 377 IPR023214 -
Vifa2g04802 378 Gene3D - 118 208 IPR023214 -
Vifa2g04802 378 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 372 IPR044651 GO:0004805|GO:0005992
Vifa2g04802 378 NCBIfam HAD-IIB family hydrolase 120 330 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04802 Vifa-Chr2 1422724094 1422726228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04802 112 366 Trehalose Biosynthesis Gene Families AT1G70290 26.740 2.34e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04802 K01087 - gmx:100819495 652.514