Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04795 ATGGATAATGATGATTGTGATCTGTTTTCCATTTTGCATAGCTGCAATGCTAACACTTTCCAAACTCTTCCTCCACCTCAAAACCTAATTACCACCTCCACCATTACCAATAACATTATATCTCCTCAAAACACCACACCATCTTACTTTGATGATTTTTCTTTAACCCAAGAAAATAGATCTGTCAGTTTTTCTCCACTTAAACCAACTGATTTTATAGAGTTAGACAAATTAAAAACCAATTTCAATCCCACCACTACTATCTTAGCTTCCCCTACCTCCATTCCTATCCCTACCCACAAAACCACCTCTATAATCACTAATACTATTAATCATGACTCCAATCAAAATTTCAAATTTTTTGATTTCCCAACACTCATCCCAGAACCACAGATGCAAACAACTGATACTACTATCCATATTCCCACCATCAATAACCTTACCACCAATATTCCCAGTGTCACCTTTGCTAACCCTAGCCTTCCATCAAATATTTTTACTACAAGCTCCACAACCGCTGCTCCTTCTATCACTACCATGATTAATACTAGCACTAGTTTTCATGGAACCAATAACTATCCTAGGATACATAATTCCCCCAACCTCTTTGAACAACAACAGATCCAACAAAATCAAAACAATCATCTCTCTTCTATCAAACCTGTCACTTGCATTGAAATCACAAAGGCTCATTTTGATCTTGCTTACAACCATCCATCATTTTCTAAGCAATACACAACAGACTGCAACCAACTGCCAAATCTACAACCCCATACAGACCCGCAACAAGAACTATGCAAAAATAGAAAAAGAAAGTTTGATAATCAGAAGATAGTAGAATGGCATATAAGTGTTGACAAGTTGGGTGAGGATCCATGGGAATGGAGAAAATATGGACAAAAACCCATTAAAGGATCTCGACATCTAAGGGACTACTATAAATGTAGCAATTTCAAAGATTGTGTAGCAAAAAAACAAGTTGAAAAAAAACCAAACAAAGAGAATATTTATGTTGTGACATATATAGGAGAGCACAATCATCCAAAACCTGTTGTGAATTGGCCTCCTCATAAGAAATCATCAAAGAAGAAATCATCCAATGTCAAAAAATATGGATCTTTGTCAAATATTAGAAACTCTGGTTCTCCAAATATGGTGATGTCACAGATTGATCAGCCAGAATGCAGCAATGCTCAGGTTCATCGACGTCAATCAAAAGTCAATTATCAAGAAGACGAATGA 1242 0.3623 MDNDDCDLFSILHSCNANTFQTLPPPQNLITTSTITNNIISPQNTTPSYFDDFSLTQENRSVSFSPLKPTDFIELDKLKTNFNPTTTILASPTSIPIPTHKTTSIITNTINHDSNQNFKFFDFPTLIPEPQMQTTDTTIHIPTINNLTTNIPSVTFANPSLPSNIFTTSSTTAAPSITTMINTSTSFHGTNNYPRIHNSPNLFEQQQIQQNQNNHLSSIKPVTCIEITKAHFDLAYNHPSFSKQYTTDCNQLPNLQPHTDPQQELCKNRKRKFDNQKIVEWHISVDKLGEDPWEWRKYGQKPIKGSRHLRDYYKCSNFKDCVAKKQVEKKPNKENIYVVTYIGEHNHPKPVVNWPPHKKSSKKKSSNVKKYGSLSNIRNSGSPNMVMSQIDQPECSNAQVHRRQSKVNYQEDE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04795 413 MobiDBLite consensus disorder prediction 348 413 - -
Vifa2g04795 413 ProSiteProfiles WRKY domain profile. 284 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g04795 413 Gene3D WRKY domain 274 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g04795 413 MobiDBLite consensus disorder prediction 367 404 - -
Vifa2g04795 413 SUPERFAMILY WRKY DNA-binding domain 288 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g04795 413 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 180 388 IPR044810 GO:0003700
Vifa2g04795 413 SMART WRKY_cls 289 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g04795 413 Pfam WRKY DNA -binding domain 290 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04795 Vifa-Chr2 1418228873 1418231202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04795 267 350 WRKY Transcription Factor Family AT4G01250 47.619 1.39e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g04795 WRKY 1.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04795 - - psat:127103159 510.76