Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04790 ATGGACCCTCTCGATTCAAATCCCCCCATCGATCCACCTCAGCACAACGACACCATATCAGATCACCACAACCAATCCCAAACCCTAACTCCCGTAAACGGCATCAATGGAAACTCACCCGAAAACGTCGAATCAGCCGCCGCCGATGACAATCCCCGGCCACGTGTCACAAATCAACTTCTCTCTGAGAACGGTTTGACCGGCCAAACCCGAAGCGGAACCGATAAGGATCAATCAGGAGGCGAAGAAGAGACAACCAGCAAGCGCCGCCGTAGGAGCCGCTGGGATCCACAGCCAGATTCAAACGATCAGACTAGTGGCGAAACCGGTGCTGGAACAAAGAAAAGGAAATCACGCTGGGCAGACGATGAGCCGAAACCGGTAATTCAGCTTCCTGATTTCATGGGTGGGATTGAATTTGATCCGGAAATTCAGGCTTTGAATAGTAGGTTACTTGAGATTAGTAGAATGTTGCAATCTGGTTTGCCTTTGGATGATCGTCCTGAAGGTGCTAGATCTCCTTCGCCGGAACCTATATATGATAATATGGGGATTAGGATTAATACTAGAGAGTATCGTGCACGCGAGAGATTACAGAAGGAGAGACAAGAGATTATATCTCAGATTATTAAGAAAAATCCGGCTTTTAAGCCACCTGCGGATTATAGACCACCGAAGCTTCAGAAGAAGCTTTATATACCAATGAAGGAGTATCCTGGTTATAATTTTATAGGGCTTATTATTGGTCCTAGGGGGAATACTCAGAAACGGATGGAGAAGGAAACTGGTGCTAAGATTGTCATTCGAGGGAAAGGGTCTGTGAAAGAAGGGAGGTTGCAACAGAAGAGGGATTTGAAACCGGATCCTTCAGAGAATGAAGATTTGCATGTTTTGGTGGAGGCTGATACTGCGGATGCACTTGAAGCTGCAGCTGGTATGGTGGAGAAACTCTTGCAGCCCGTGGATGAGGTTTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCTTTGAATGGAACCATTAGGGATGAAGAGTATTGTCGTCTGTGTGGTGAACCTGGTCATCGTCAATATGCATGTCCTACAAGGACTTCGACGTTTAAGAGTGAGGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCGGTGAAGGGTGCTACAGGGAAGAAGATGGATGATGAGTATCAGAATTTCTTGGCTGAGTTGGGTGGTACTGTTCCCGAATCTGCAACGAAGCAAACTAGTACTTTGGCAATTGGGGCGGGCAGTTCTGGAAGCAATCCACCTTGGGCTAACAACTCTGGTTCGGCTGGTAGTACACCACACCCTGGCTTAGGGTCTGGTGCAGTTAAAAAGGAAATCGATGATACAAATTTGTACATTGGATATTTGCCGCCCACTCTTGAGGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCCAAAGTTATTAAAGATCGAATGACAGGGTTGAGTAAAGGATATGGGTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTAGCTATGAATGGTTATCGTCTCGAGGGCCGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTGCCTCCTGGCCCACCAGCGTCGGCTGTGCCCACTTATCCTAGTCCAAGCCAGCCACTTGGCGCCTATCCATCCCAACAATATACCGGCGGTGGTCCACTTGGGAGTGCTCCTCCTCCTCCTCCTGGGAGTTACGGTGGTACCCCAGTCCCGTGGGGACCTCCTATTCCTCAATACAATCCTTATGCTCCTCCTCCACCTGGCTCGACTATGTATCCTCCTATGCAAGGTCACCCTATGCCTCCTTATGGTGTTCAATATCCACCCATGCCGACAGGTCCCCCTGGTGCCACGACCCAGCCCACAACTTCTGGTGAAATGCAGAATTACCCTCCTGGAGTGCAGTCTGATAACACATCTACTCAGTCTGTACCAACCAACATGTATGGGAACACAGTACCTTCAATGCCACCAGCAGCTCCACCAACATTTCCTGCATCTTATGGATATCCTCCTCCACCTTACTACAATGCAGTTCCTCCACCACCTCCTCCTGCCCCTACAGACCAATCCCACAACATTGTAAACCCTCCTTGGGCTAGCAACCATTCTGCCCCACCTCCTCCTTCATCTGCAGATCAATCCCAAAGCATTGGAAATGCAGCTATGCCACCTCCTAACTCATCGGCGGAGAAGACATCATATGGAGCTGATTCAGAGTATGAGAAATTCATGGCAGAGATGAAGTGA 2331 0.4835 MDPLDSNPPIDPPQHNDTISDHHNQSQTLTPVNGINGNSPENVESAAADDNPRPRVTNQLLSENGLTGQTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQTSGETGAGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGAGSSGSNPPWANNSGSAGSTPHPGLGSGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPSPSQPLGAYPSQQYTGGGPLGSAPPPPPGSYGGTPVPWGPPIPQYNPYAPPPPGSTMYPPMQGHPMPPYGVQYPPMPTGPPGATTQPTTSGEMQNYPPGVQSDNTSTQSVPTNMYGNTVPSMPPAAPPTFPASYGYPPPPYYNAVPPPPPPAPTDQSHNIVNPPWASNHSAPPPPSSADQSQSIGNAAMPPPNSSAEKTSYGADSEYEKFMAEMK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04790 776 ProSiteProfiles Type-1 KH domain profile. 242 314 - -
Vifa2g04790 776 Gene3D K Homology domain, type 1 219 347 IPR036612 GO:0003723
Vifa2g04790 776 MobiDBLite consensus disorder prediction 644 670 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 272 292 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 1 128 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 697 718 - -
Vifa2g04790 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 535 IPR000504 GO:0003723
Vifa2g04790 776 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 227 353 IPR036612 GO:0003723
Vifa2g04790 776 Pfam Splicing factor 1 helix-hairpin domain 116 223 IPR032570 -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 11 45 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 543 560 - -
Vifa2g04790 776 SUPERFAMILY RNA-binding domain, RBD 460 553 IPR035979 GO:0003676
Vifa2g04790 776 PANTHER RNA-BINDING PROTEIN RELATED 77 585 IPR045071 -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 543 599 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 697 776 - -
Vifa2g04790 776 Gene3D - 141 218 IPR047086 -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 76 98 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 425 448 - -
Vifa2g04790 776 CDD KH-I_BBP 226 319 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 719 762 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 163 182 - -
Vifa2g04790 776 Gene3D - 348 400 - -
Vifa2g04790 776 FunFam splicing factor-like protein 1 444 546 - -
Vifa2g04790 776 SUPERFAMILY Retrovirus zinc finger-like domains 345 391 IPR036875 GO:0003676|GO:0008270
Vifa2g04790 776 SMART rrm1_1 465 538 IPR000504 GO:0003723
Vifa2g04790 776 SMART kh_6 227 319 IPR004087 GO:0003676
Vifa2g04790 776 MobiDBLite consensus disorder prediction 425 455 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 55 75 - -
Vifa2g04790 776 FunFam splicing factor-like protein 1 219 347 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 110 126 - -
Vifa2g04790 776 MobiDBLite consensus disorder prediction 630 670 - -
Vifa2g04790 776 Gene3D - 435 546 IPR012677 -
Vifa2g04790 776 SMART c2hcfinal6 374 390 IPR001878 GO:0003676|GO:0008270
Vifa2g04790 776 SMART c2hcfinal6 348 364 IPR001878 GO:0003676|GO:0008270
Vifa2g04790 776 ProSiteProfiles Zinc finger CCHC-type profile. 375 389 IPR001878 GO:0003676|GO:0008270
Vifa2g04790 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 542 IPR000504 GO:0003723
Vifa2g04790 776 ProSiteProfiles Zinc finger CCHC-type profile. 349 363 IPR001878 GO:0003676|GO:0008270
Vifa2g04790 776 MobiDBLite consensus disorder prediction 581 599 - -
Vifa2g04790 776 Pfam KH domain 242 290 IPR004088 GO:0003723
Vifa2g04790 776 FunFam splicing factor 1 347 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04790 Vifa-Chr2 1417000562 1417002892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04790 464 669 Eukaryotic Initiation Factors Gene Family AT3G16380 26.267 1.37e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04790 K13095 - gmx:100800982 1115.91