Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g04790 | ATGGACCCTCTCGATTCAAATCCCCCCATCGATCCACCTCAGCACAACGACACCATATCAGATCACCACAACCAATCCCAAACCCTAACTCCCGTAAACGGCATCAATGGAAACTCACCCGAAAACGTCGAATCAGCCGCCGCCGATGACAATCCCCGGCCACGTGTCACAAATCAACTTCTCTCTGAGAACGGTTTGACCGGCCAAACCCGAAGCGGAACCGATAAGGATCAATCAGGAGGCGAAGAAGAGACAACCAGCAAGCGCCGCCGTAGGAGCCGCTGGGATCCACAGCCAGATTCAAACGATCAGACTAGTGGCGAAACCGGTGCTGGAACAAAGAAAAGGAAATCACGCTGGGCAGACGATGAGCCGAAACCGGTAATTCAGCTTCCTGATTTCATGGGTGGGATTGAATTTGATCCGGAAATTCAGGCTTTGAATAGTAGGTTACTTGAGATTAGTAGAATGTTGCAATCTGGTTTGCCTTTGGATGATCGTCCTGAAGGTGCTAGATCTCCTTCGCCGGAACCTATATATGATAATATGGGGATTAGGATTAATACTAGAGAGTATCGTGCACGCGAGAGATTACAGAAGGAGAGACAAGAGATTATATCTCAGATTATTAAGAAAAATCCGGCTTTTAAGCCACCTGCGGATTATAGACCACCGAAGCTTCAGAAGAAGCTTTATATACCAATGAAGGAGTATCCTGGTTATAATTTTATAGGGCTTATTATTGGTCCTAGGGGGAATACTCAGAAACGGATGGAGAAGGAAACTGGTGCTAAGATTGTCATTCGAGGGAAAGGGTCTGTGAAAGAAGGGAGGTTGCAACAGAAGAGGGATTTGAAACCGGATCCTTCAGAGAATGAAGATTTGCATGTTTTGGTGGAGGCTGATACTGCGGATGCACTTGAAGCTGCAGCTGGTATGGTGGAGAAACTCTTGCAGCCCGTGGATGAGGTTTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCTTTGAATGGAACCATTAGGGATGAAGAGTATTGTCGTCTGTGTGGTGAACCTGGTCATCGTCAATATGCATGTCCTACAAGGACTTCGACGTTTAAGAGTGAGGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCGGTGAAGGGTGCTACAGGGAAGAAGATGGATGATGAGTATCAGAATTTCTTGGCTGAGTTGGGTGGTACTGTTCCCGAATCTGCAACGAAGCAAACTAGTACTTTGGCAATTGGGGCGGGCAGTTCTGGAAGCAATCCACCTTGGGCTAACAACTCTGGTTCGGCTGGTAGTACACCACACCCTGGCTTAGGGTCTGGTGCAGTTAAAAAGGAAATCGATGATACAAATTTGTACATTGGATATTTGCCGCCCACTCTTGAGGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCCAAAGTTATTAAAGATCGAATGACAGGGTTGAGTAAAGGATATGGGTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTAGCTATGAATGGTTATCGTCTCGAGGGCCGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTGCCTCCTGGCCCACCAGCGTCGGCTGTGCCCACTTATCCTAGTCCAAGCCAGCCACTTGGCGCCTATCCATCCCAACAATATACCGGCGGTGGTCCACTTGGGAGTGCTCCTCCTCCTCCTCCTGGGAGTTACGGTGGTACCCCAGTCCCGTGGGGACCTCCTATTCCTCAATACAATCCTTATGCTCCTCCTCCACCTGGCTCGACTATGTATCCTCCTATGCAAGGTCACCCTATGCCTCCTTATGGTGTTCAATATCCACCCATGCCGACAGGTCCCCCTGGTGCCACGACCCAGCCCACAACTTCTGGTGAAATGCAGAATTACCCTCCTGGAGTGCAGTCTGATAACACATCTACTCAGTCTGTACCAACCAACATGTATGGGAACACAGTACCTTCAATGCCACCAGCAGCTCCACCAACATTTCCTGCATCTTATGGATATCCTCCTCCACCTTACTACAATGCAGTTCCTCCACCACCTCCTCCTGCCCCTACAGACCAATCCCACAACATTGTAAACCCTCCTTGGGCTAGCAACCATTCTGCCCCACCTCCTCCTTCATCTGCAGATCAATCCCAAAGCATTGGAAATGCAGCTATGCCACCTCCTAACTCATCGGCGGAGAAGACATCATATGGAGCTGATTCAGAGTATGAGAAATTCATGGCAGAGATGAAGTGA | 2331 | 0.4835 | MDPLDSNPPIDPPQHNDTISDHHNQSQTLTPVNGINGNSPENVESAAADDNPRPRVTNQLLSENGLTGQTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQTSGETGAGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGAGSSGSNPPWANNSGSAGSTPHPGLGSGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPSPSQPLGAYPSQQYTGGGPLGSAPPPPPGSYGGTPVPWGPPIPQYNPYAPPPPGSTMYPPMQGHPMPPYGVQYPPMPTGPPGATTQPTTSGEMQNYPPGVQSDNTSTQSVPTNMYGNTVPSMPPAAPPTFPASYGYPPPPYYNAVPPPPPPAPTDQSHNIVNPPWASNHSAPPPPSSADQSQSIGNAAMPPPNSSAEKTSYGADSEYEKFMAEMK | 776 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g04790 | 776 | ProSiteProfiles | Type-1 KH domain profile. | 242 | 314 | - | - | |
Vifa2g04790 | 776 | Gene3D | K Homology domain, type 1 | 219 | 347 | IPR036612 | GO:0003723 | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 644 | 670 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 272 | 292 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 1 | 128 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 697 | 718 | - | - | |
Vifa2g04790 | 776 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 466 | 535 | IPR000504 | GO:0003723 | |
Vifa2g04790 | 776 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 227 | 353 | IPR036612 | GO:0003723 | |
Vifa2g04790 | 776 | Pfam | Splicing factor 1 helix-hairpin domain | 116 | 223 | IPR032570 | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 11 | 45 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 543 | 560 | - | - | |
Vifa2g04790 | 776 | SUPERFAMILY | RNA-binding domain, RBD | 460 | 553 | IPR035979 | GO:0003676 | |
Vifa2g04790 | 776 | PANTHER | RNA-BINDING PROTEIN RELATED | 77 | 585 | IPR045071 | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 543 | 599 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 697 | 776 | - | - | |
Vifa2g04790 | 776 | Gene3D | - | 141 | 218 | IPR047086 | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 76 | 98 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 425 | 448 | - | - | |
Vifa2g04790 | 776 | CDD | KH-I_BBP | 226 | 319 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 719 | 762 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 163 | 182 | - | - | |
Vifa2g04790 | 776 | Gene3D | - | 348 | 400 | - | - | |
Vifa2g04790 | 776 | FunFam | splicing factor-like protein 1 | 444 | 546 | - | - | |
Vifa2g04790 | 776 | SUPERFAMILY | Retrovirus zinc finger-like domains | 345 | 391 | IPR036875 | GO:0003676|GO:0008270 | |
Vifa2g04790 | 776 | SMART | rrm1_1 | 465 | 538 | IPR000504 | GO:0003723 | |
Vifa2g04790 | 776 | SMART | kh_6 | 227 | 319 | IPR004087 | GO:0003676 | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 425 | 455 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 55 | 75 | - | - | |
Vifa2g04790 | 776 | FunFam | splicing factor-like protein 1 | 219 | 347 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 110 | 126 | - | - | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 630 | 670 | - | - | |
Vifa2g04790 | 776 | Gene3D | - | 435 | 546 | IPR012677 | - | |
Vifa2g04790 | 776 | SMART | c2hcfinal6 | 374 | 390 | IPR001878 | GO:0003676|GO:0008270 | |
Vifa2g04790 | 776 | SMART | c2hcfinal6 | 348 | 364 | IPR001878 | GO:0003676|GO:0008270 | |
Vifa2g04790 | 776 | ProSiteProfiles | Zinc finger CCHC-type profile. | 375 | 389 | IPR001878 | GO:0003676|GO:0008270 | |
Vifa2g04790 | 776 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 464 | 542 | IPR000504 | GO:0003723 | |
Vifa2g04790 | 776 | ProSiteProfiles | Zinc finger CCHC-type profile. | 349 | 363 | IPR001878 | GO:0003676|GO:0008270 | |
Vifa2g04790 | 776 | MobiDBLite | consensus disorder prediction | 581 | 599 | - | - | |
Vifa2g04790 | 776 | Pfam | KH domain | 242 | 290 | IPR004088 | GO:0003723 | |
Vifa2g04790 | 776 | FunFam | splicing factor 1 | 347 | 400 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g04790 | Vifa-Chr2 | 1417000562 | 1417002892 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g04790 | 464 | 669 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 26.267 | 1.37e-12 | 68.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g04790 | K13095 | - | gmx:100800982 | 1115.91 |