Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g04789 | ATGAAGGAGTATCCTGGTTATAATTTTATAGGGCTTATTATTGGTCCTAGGGGGAATACTCAGAAACGGATGGAGAAGGAAACTGGTGCTAAGATTGTCATTCGAGGGAAAGGGTCTGTGAAAGAAGGGAGGTTGCAACAGAAGAGGGATTTGAAACCGGATCCTTCAGAGAATGAAGATTTGCATGTTTTGGTGGAGGCTGATACTGCGGATGCACTTGAAGCTGCAGCTGGTATGGTGGAGAAACTCTTGCAGCCCGTGGATGAGGTTTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCTTTGAATGGAACCATTAGGGATGAAGAGTATTGTCGTCTGTGTGGTGAACCTGGTCATCGTCAATATGCATGTCCTACAAGGACTTCGACGTTTAAGAGTGAGGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCGGTGAAGGGTGCTACAGGGAAGAAGATGGATGATGAGTATCAGAATTTCTTGGCTGAGTTGGGTGGTACTGTTCCCGAATCTGCAACGAAGCAAACTAGTACTTTGGCAATTGGGGCGGGCAGTTCTGGAAGCAATCCACCTTGGGCTAACAACTCTGGTTCGGCTGGTAGTACACCACACCCTGGCTTAGGGTCTGGTGCAGTTAAAAAGGAAATCGATGATACAAATTTGTACATTGGATATTTGCCGCCCACTCTTGAGGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCCAAAGTTATTAAAGATCGAATGACAGGGTTGAGTAAAGGATATGGGTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTAGCTATGAATGGTTATCGTCTCGAGGGCCGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTGCCTCCTGGCCCACCAGCGTCGGCTGTGCCCACTTATCCTAGTCCAAGCCAGCCACTTGGCGCCTATCCATCCCAACAATATACCGGCGGTGGTCCACTTGGGAGTGCTCCTCCTCCTCCTCCTGGGAGTTACGGTGGTACCCCAGTCCCGTGGGGACCTCCTATTCCTCAATACAATCCTTATGCTCCTCCTCCACCTGGCTCGACTATGTATCCTCCTATGCAAGGTCACCCTATGCCTCCTTATGGTGTTCAATATCCACCCATGCCGACAGGTCCCCCTGGTGCCACGACCCAGCCCACAACTTCTGGTGAAATGCAGAATTACCCTCCTGGAGTGCAGTCTGATAACACATCTACTCAGTCTGTACCAACCAACATGTATGGGAACACAGTACCTTCAATGCCACCAGCAGCTCCACCAACATTTCCTGCATCTTATGGATATCCTCCTCCACCTTACTACAATGCAGTTCCTCCACCACCTCCTCCTGCCCCTACAGACCAATCCCACAACATTGTAAACCCTCCTTGGGCTAGCAACCATTCTGCCCCACCTCCTCCTTCATCTGCAGATCAATCCCAAAGCATTGGAAATGCAGCTATGCCACCTCCTAACTCATCGGCGGAGAAGACATCATATGGAGCTGATTCAGAGTATGAGAAATTCATGGCAGAGATGAAGTGA | 1629 | 0.4862 | MKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGAGSSGSNPPWANNSGSAGSTPHPGLGSGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPSPSQPLGAYPSQQYTGGGPLGSAPPPPPGSYGGTPVPWGPPIPQYNPYAPPPPGSTMYPPMQGHPMPPYGVQYPPMPTGPPGATTQPTTSGEMQNYPPGVQSDNTSTQSVPTNMYGNTVPSMPPAAPPTFPASYGYPPPPYYNAVPPPPPPAPTDQSHNIVNPPWASNHSAPPPPSSADQSQSIGNAAMPPPNSSAEKTSYGADSEYEKFMAEMK | 542 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g04789 | 542 | SMART | rrm1_1 | 231 | 304 | IPR000504 | GO:0003723 | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 463 | 484 | - | - | |
| Vifa2g04789 | 542 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 232 | 301 | IPR000504 | GO:0003723 | |
| Vifa2g04789 | 542 | Gene3D | K Homology domain, type 1 | 1 | 113 | IPR036612 | GO:0003723 | |
| Vifa2g04789 | 542 | SMART | kh_6 | 8 | 85 | IPR004087 | GO:0003676 | |
| Vifa2g04789 | 542 | PANTHER | RNA-BINDING PROTEIN RELATED | 1 | 351 | IPR045071 | - | |
| Vifa2g04789 | 542 | Gene3D | - | 200 | 312 | IPR012677 | - | |
| Vifa2g04789 | 542 | FunFam | splicing factor-like protein 1 | 1 | 113 | - | - | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 347 | 365 | - | - | |
| Vifa2g04789 | 542 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 2 | 119 | IPR036612 | GO:0003723 | |
| Vifa2g04789 | 542 | Gene3D | - | 114 | 166 | - | - | |
| Vifa2g04789 | 542 | ProSiteProfiles | Zinc finger CCHC-type profile. | 141 | 155 | IPR001878 | GO:0003676|GO:0008270 | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 410 | 436 | - | - | |
| Vifa2g04789 | 542 | ProSiteProfiles | Type-1 KH domain profile. | 8 | 80 | - | - | |
| Vifa2g04789 | 542 | CDD | KH-I_BBP | 1 | 85 | - | - | |
| Vifa2g04789 | 542 | SUPERFAMILY | RNA-binding domain, RBD | 226 | 319 | IPR035979 | GO:0003676 | |
| Vifa2g04789 | 542 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 230 | 308 | IPR000504 | GO:0003723 | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 309 | 326 | - | - | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 191 | 221 | - | - | |
| Vifa2g04789 | 542 | Pfam | KH domain | 8 | 56 | IPR004088 | GO:0003723 | |
| Vifa2g04789 | 542 | FunFam | splicing factor-like protein 1 | 210 | 312 | - | - | |
| Vifa2g04789 | 542 | SMART | c2hcfinal6 | 114 | 130 | IPR001878 | GO:0003676|GO:0008270 | |
| Vifa2g04789 | 542 | SMART | c2hcfinal6 | 140 | 156 | IPR001878 | GO:0003676|GO:0008270 | |
| Vifa2g04789 | 542 | FunFam | splicing factor 1 | 113 | 166 | - | - | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 309 | 365 | - | - | |
| Vifa2g04789 | 542 | ProSiteProfiles | Zinc finger CCHC-type profile. | 115 | 129 | IPR001878 | GO:0003676|GO:0008270 | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 485 | 528 | - | - | |
| Vifa2g04789 | 542 | SUPERFAMILY | Retrovirus zinc finger-like domains | 111 | 157 | IPR036875 | GO:0003676|GO:0008270 | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 396 | 436 | - | - | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 463 | 542 | - | - | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 191 | 214 | - | - | |
| Vifa2g04789 | 542 | MobiDBLite | consensus disorder prediction | 38 | 58 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g04789 | Vifa-Chr2 | 1417000562 | 1417002190 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa2g04789 | 230 | 435 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 26.267 | 1.03e-12 | 68.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g04789 | K13095 | - | gmx:100800982 | 787.334 |