Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04787 ATGGAGAACAACGGCAAAGTCTGTGGGATTTGTGATAAGTGGTTCTCCAGTGGGAAAGCCATTGGAGGCCACATGAGATCTCACTACGTCAAATTGCCGATTCCTCCAAAGCTTGAAACTAACAATCAAGTACAAGACGATTCAGCCAATTCAACCCAGCATCCCATTCAATCTGCTCCCTCGCTGAGTTGCTATCCCAAAGAAAAACACACAGAGAATTCCGGATCTATGAAACGCAACTTGTCTGCCATCTCTGCAAGCTCAACCAGAGAAAACAAATCTGAGTCCTACCCACAAACCCCAACCCACAAAAGATCTAAAAGCCTCCAGGAACAAGATGCGGCGGCCGATACAAAATCTCTGTCAGAACAAACAAGTCCAATAAGTGAAACTAAAATTCCTCGAGGTGCTTGGATAGTGTGGGATTTTTACGAATTCGCGCAGCAAAAGGAAGAGGCCAAGGCACAAAAAATAAAGGAAATCAACGAAATGAAGGCAGAAGACAGTGGAAGCAGGAGAGGTGAGTTGCTTGCTGAAGCTGACTCTCAAACCAGGTTCAAGTGTGAGAGGTGCGGAAAGGTGCTCCGATCTTTTCAAGCTCTTGGTGGGCACAAAGCACACTGCAGAAATGACAAAGATGGTGACTTTATTGATCAGAAACCTTTTCAATGCCCATACTGCAACAGATTTTTCAAGTCTGCTCAAGCACTCGGTGGACACAGGAGGGTACACTTTTCCGTTGCTAATGAATTTTGA 756 0.4511 MENNGKVCGICDKWFSSGKAIGGHMRSHYVKLPIPPKLETNNQVQDDSANSTQHPIQSAPSLSCYPKEKHTENSGSMKRNLSAISASSTRENKSESYPQTPTHKRSKSLQEQDAAADTKSLSEQTSPISETKIPRGAWIVWDFYEFAQQKEEAKAQKIKEINEMKAEDSGSRRGELLAEADSQTRFKCERCGKVLRSFQALGGHKAHCRNDKDGDFIDQKPFQCPYCNRFFKSAQALGGHRRVHFSVANEF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04787 251 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vifa2g04787 251 MobiDBLite consensus disorder prediction 38 129 - -
Vifa2g04787 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 244 IPR013087 -
Vifa2g04787 251 MobiDBLite consensus disorder prediction 38 60 - -
Vifa2g04787 251 Gene3D Classic Zinc Finger 147 249 - -
Vifa2g04787 251 SUPERFAMILY beta-beta-alpha zinc fingers 7 244 IPR036236 -
Vifa2g04787 251 MobiDBLite consensus disorder prediction 113 129 - -
Vifa2g04787 251 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 246 IPR044303 GO:0006355
Vifa2g04787 251 MobiDBLite consensus disorder prediction 76 105 - -
Vifa2g04787 251 Coils Coil 147 167 - -
Vifa2g04787 251 ProSitePatterns Zinc finger C2H2 type domain signature. 224 244 IPR013087 -
Vifa2g04787 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Vifa2g04787 251 Pfam C2H2-type zinc finger 222 244 - -
Vifa2g04787 251 Pfam C2H2-type zinc finger 8 28 - -
Vifa2g04787 251 Pfam C2H2-type zinc finger 185 207 - -
Vifa2g04787 251 SMART c2h2final6 186 207 IPR013087 -
Vifa2g04787 251 SMART c2h2final6 222 244 IPR013087 -
Vifa2g04787 251 SMART c2h2final6 6 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04787 Vifa-Chr2 1415912878 1415913633 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04787 8 251 C2H2 Transcription Factor Family AT1G02030 29.231 1.83e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g04787 zf-C2H2_6 5.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04787 - - mtr:112420782 271.166