Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04783 ATGGAGAAGAACAACGGCAAAGTCTGTTGGATTTGTGATAAGAGGTTCTCCGGTGGGAAAGCCATTGGAGGCCACATGAGATCTCACTACGTCAAATTGTCAATTCCTCCAAAGCTTGAAACTAAGAATCAACCACTAGCCAATTCAACCAATTTAACCCAGCATCCAATTTCTGCTTCCTCACTGACTAGCCATCCCGAAGAAAACCAAACAGAGATTTTTCAACCTATGAAACGCAACTCCTCTGCCTTCTCTGCAAACTCAAACAGAGGAGACAGATCTGTACCCTACCCACAAAGCCCAACCCGCAAGAGATCCAAATGCCACCGCAAATTTAATGCAGCGGACGATACGGAAGCAGTTGAGGCTCTCTGTTTGCTGTCCGAAGGGGAGCCAAAGAGCTGTAGAGGAGACTCGCTTGCTCAAGCTGACTCTCAAACCAGGTTCAAGTGCAATATGTGTGGAAAAATGTTCCAATCTTACCAAGCTCTTGGTGGGCACAAAGCAAACCATAGCAAGACTAAGAATCTGGGCCAGAGTGGTGGATACCCACACTCGTGTTGA 564 0.4681 MEKNNGKVCWICDKRFSGGKAIGGHMRSHYVKLSIPPKLETKNQPLANSTNLTQHPISASSLTSHPEENQTEIFQPMKRNSSAFSANSNRGDRSVPYPQSPTRKRSKCHRKFNAADDTEAVEALCLLSEGEPKSCRGDSLAQADSQTRFKCNMCGKMFQSYQALGGHKANHSKTKNLGQSGGYPHSC 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04783 187 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 112 IPR044303 GO:0006355
Vifa2g04783 187 MobiDBLite consensus disorder prediction 168 187 - -
Vifa2g04783 187 SMART c2h2final6 7 29 IPR013087 -
Vifa2g04783 187 SMART c2h2final6 149 171 IPR013087 -
Vifa2g04783 187 MobiDBLite consensus disorder prediction 82 109 - -
Vifa2g04783 187 SUPERFAMILY beta-beta-alpha zinc fingers 8 171 IPR036236 -
Vifa2g04783 187 Gene3D Classic Zinc Finger 8 171 - -
Vifa2g04783 187 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Vifa2g04783 187 Pfam C2H2-type zinc finger 148 173 - -
Vifa2g04783 187 Pfam C2H2-type zinc finger 9 29 - -
Vifa2g04783 187 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Vifa2g04783 187 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Vifa2g04783 187 MobiDBLite consensus disorder prediction 82 101 - -
Vifa2g04783 187 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04783 Vifa-Chr2 1414855979 1414856542 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04783 2 178 C2H2 Transcription Factor Family AT1G02030 26.804 8.11e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g04783 zf-C2H2_6 1.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04783 - - cam:101511854 181.8