Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04778 ATGAAGCGTGCGAGAGCCACAGGCGAGTCTAGCTCTTCTAGGGTTTCGCCGAGTCTCGAAGCAGGAGTCATCAAGAAACTCCGGTTGGAGAATTTCATGTGTCATTCAAATCACGAAACTGTGTTTGGAAATCACGTTAATGTCATCACTGGACAAAACGGAAGTGGTAAAAGTGCAATACTTACTGCGTTGTGTGTTGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGAGCATCTACTTTGAAGGATTTTATCAAAACTGGTGCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATGTACGGGGATGTTATCATTGTAGAACGTAGGATATCTGAATCCACAAGCTCTATCACATTGAAAGATCACCAAGGAAAGAAAGTTTTCAGTCGGAAAGCAGATCTTCAGGAAATCATTGAACATTTCAATATTGATGTGGAGAATCCGTGTGTGATAATGAGTCAAGACAAAAGCAGAGAGTTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCGACACTTCTTCAGCAAGTCAATGATCTTCTAGAAAGCATTTCCAATGAAATAGCTATTGCACGTGGAATAGTTGAAGAATTGGAGACTGCAATAAAACCTATAGAGAAGGAGCTCAACGAGCTGCAGGTTAAAATTAAAACGATGGAACACGTTGAACAAATTTCCATACAGGTTCAGCAGTTAAAAAAGAAACTTGCCTGGTCATGGGTTTATGATGCGGACAAGAAACTTGAGGAACAAAATGTAAAGATCGAAAAGCTGAAGAGCCGGGTTCCTACTTGCCAAGCTAAGATTGATAAACAACTGCATCAGCTTGAAAAATTAATCGAAAACTGTTCTGCGAAGAAAGCTGAAATTGCAAATATGATGACATCACAAGTAAAGCAAATGAAGGAAAGTTTAAGTCGCTCGATGTCCTTGGCAAAAAAAGAAGTATATGAACTACAGCGAGACTGCAATCGCAAAACTAGTAACATACAGAAGATGGTACAACAGCTCAAAAGGCTTGAACTACAAATGCAGGATACTCACGAGCAGCATTTGAAAAATACCCAGGCTGAAGAATTTGACATGGAGGAAAAACTGAAGCAGCTTCGAGATGAGTTTAATGATGCTAAGTCCGAATATGATAGACTGAAAGAAGAAGAGGCTATGTTAATGAACAGCAGAAATGGGCAAACTGACGAAATCAGAAGGATTGATGTTAAGATCCAAGATCATGAAAAGAAGTATAATGAAATCATGCATAATATTCGCAATCTTAAAAACCAACAAAGCAACAAGATCACAGCTTTTGGAGGAAATAAAGTGATTAATCTGTTACGTGTAATTGAGAGATATCATCAAAGGTTTAAGGTGCCTCCTATTGGTCCAATTGGTGCCCATCTGAAGTTGCGTAGTGGTAACAAATGGGCGGTTGCTGTTGAACATGCTATTGGGAGAATGCTCAATTCTTTTATAGTAACTGATCACAAGGATTTTCGTCTTTTGAAACAATGTGCAAAGGAAGCAAACTATGATCGTCTTCAAATTATTATTTATGATTTTTCAACCCCAAGGTTGATGATACCAGAGCACATGCTTCCTAATACAAACCATCCATCAACTCTTTCCATCTTACAATGCGAGAATGACACTGTGGTTAATGTCTTAGTAGATCTGGGAAATGTTGAGAGACAAGTGCTAGTTAATGACTATAATACCGGGAAGGTTGTTGCCTTTGAAGAAAGGATCCAAAATCTGAAGGAGGTCTTCACTTTGGATGGTTGTAAAATGTTCTCACGAGGTCCGGTACAGACAACTCTTCCTCCAAATAAGAAGCAGCGATATGGTCGTCTAACTAGTTCTGTTGAAGCTGATATTGAGAAACTTAGTAATGATGCATCTAATGAGCAAAAAGACGCAAATGACTATAAACGGAATAAAAGAGAGGCAGAGCTCAAGCTTGAGGATCTAGACAAGAAGATGAATTCTATAAAGAGACTTTGTACAAGTGCTGGAAGAACTTTTAGTTCTACGAAGATAGCTTTGGAGGAGAAAACAAAGGAACAAGCTGCTGAACGTAGCTCGACACCATTGTCCTCAGTTGATGAGATTGTTGAAGAAATTTCAGAAATAAACAAAAAAATAAAAGAAGAGCAGGTGTTGTTAGAAGGCCTTGAGCAGAGGAGGCAAGAATCAGTGGGAAAAGCAAATGACCTTAAAGTAAATTTTGACGAATTGTGTGAATCAGCGAATAATGAACTTGCTTCACTTGAGAAAGCTGAGAGTGAACTTATGGAGATTGAAAGGGAAATAGATTCAGCGAAAAAGGCAAAAGATCATTATGATAATGTCATGAAAAACAAAGTCCTTCATGATATTAAGGTGGCAGAGGAACACAATCTGGAGCTTACAAAAAGCCGCGAGGTAAATGTTGAGAAGGCTTCCATAATTTGCTGTCAGAATGAACTTGCTACGATAGGTGGTTGTGATGGGAAAACCCCAGAGCAAATCAGTGCCCAATTAGAAAGTCTGAATCATACACTTAGGCGTGAGAGCCAAAGATACTCCGAATCTATTGATGATCTGAGGATGCTATATGCAAAAAAAGAACGAAAGATTGCAAAAAGGCAGCAAGTTTACAGAGCCCTTCGACAGAAATTGAATGCCTGTCAGAGTGCTTTGGAGTTTCGAATGAGAAAGTTTCAGGCAAATGCAACTAATCTCAAGCATCAGCTTTCTTGGAAATTTAATGGCCATTTGAAAAAGAAGGGGATCAGTGGAGTTATCAAAGTTGATTATGAGCAGATGACCTTGTCGATTGAGGTACAGATGCCCCAAGATGCATCAAACAAAGCTGTTCGAGACACACGGGGGCTTTCAGGTGGAGAGCGGTCTTTTTCAACTTTGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGTCCCCATTTAGAGCAATGGATGAATTTGATGTCTTTATGGATGCAGTAAGCCGAAAAATTAGCATGGATACTCTGGTTGATTTTGCTGTGGCACAAGGGTCCCAGTGGATATTGATCACCCCACATGATACTAGCTTGGTGAAAGCAGGGAACAGAGTAAAGAAGATGCAAATGGCAGCTCCCCGTTCTTGA 3177 0.3947 MKRARATGESSSSRVSPSLEAGVIKKLRLENFMCHSNHETVFGNHVNVITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGEDAFKPEMYGDVIIVERRISESTSSITLKDHQGKKVFSRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISNEIAIARGIVEELETAIKPIEKELNELQVKIKTMEHVEQISIQVQQLKKKLAWSWVYDADKKLEEQNVKIEKLKSRVPTCQAKIDKQLHQLEKLIENCSAKKAEIANMMTSQVKQMKESLSRSMSLAKKEVYELQRDCNRKTSNIQKMVQQLKRLELQMQDTHEQHLKNTQAEEFDMEEKLKQLRDEFNDAKSEYDRLKEEEAMLMNSRNGQTDEIRRIDVKIQDHEKKYNEIMHNIRNLKNQQSNKITAFGGNKVINLLRVIERYHQRFKVPPIGPIGAHLKLRSGNKWAVAVEHAIGRMLNSFIVTDHKDFRLLKQCAKEANYDRLQIIIYDFSTPRLMIPEHMLPNTNHPSTLSILQCENDTVVNVLVDLGNVERQVLVNDYNTGKVVAFEERIQNLKEVFTLDGCKMFSRGPVQTTLPPNKKQRYGRLTSSVEADIEKLSNDASNEQKDANDYKRNKREAELKLEDLDKKMNSIKRLCTSAGRTFSSTKIALEEKTKEQAAERSSTPLSSVDEIVEEISEINKKIKEEQVLLEGLEQRRQESVGKANDLKVNFDELCESANNELASLEKAESELMEIEREIDSAKKAKDHYDNVMKNKVLHDIKVAEEHNLELTKSREVNVEKASIICCQNELATIGGCDGKTPEQISAQLESLNHTLRRESQRYSESIDDLRMLYAKKERKIAKRQQVYRALRQKLNACQSALEFRMRKFQANATNLKHQLSWKFNGHLKKKGISGVIKVDYEQMTLSIEVQMPQDASNKAVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISMDTLVDFAVAQGSQWILITPHDTSLVKAGNRVKKMQMAAPRS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04778 1058 Gene3D - 23 227 IPR027417 -
Vifa2g04778 1058 Pfam RecF/RecN/SMC N terminal domain 24 1053 IPR003395 -
Vifa2g04778 1058 Coils Coil 881 901 - -
Vifa2g04778 1058 Coils Coil 197 231 - -
Vifa2g04778 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 17 1057 - -
Vifa2g04778 1058 Coils Coil 368 409 - -
Vifa2g04778 1058 Coils Coil 285 309 - -
Vifa2g04778 1058 Gene3D - 746 1055 IPR027417 -
Vifa2g04778 1058 SUPERFAMILY Smc hinge domain 429 616 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vifa2g04778 1058 Coils Coil 339 366 - -
Vifa2g04778 1058 Coils Coil 257 277 - -
Vifa2g04778 1058 Coils Coil 716 799 - -
Vifa2g04778 1058 Coils Coil 641 682 - -
Vifa2g04778 1058 Coils Coil 424 444 - -
Vifa2g04778 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1051 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04778 Vifa-Chr2 1413402085 1413445300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04778 21 1058 Structural Maintenance of Chromosomes family AT5G07660 56.731 0.0 1163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04778 K22804 - gmx:100816916 1538.86