Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04761 ATGGACGGCGACGGCGGCGAGGAAGATTCTCGCCACGGAAGCTCCGCAGTAACTCATGAAACCGTCGATCAACTCATTGCCAGGTGCATAGCTCCCGTCAAACACGAGTTCCTCCGTCCTCCTCCCGATCGAACTTCCTCCCAAAACGACGACGTTTCAACCCCAAAGAACAAAGCCCCCGTTCTCGCCAAGGAGAAGAAATCCAAACGCCAACTCAAACGCGAACGTCGTCAGGATCAAAAATCAACGAAAAATCTGTGTCCTGAAATTTCAAAGTCCGGTGATGTTAATTCGTGTCGTTATCAAGATAAGTGTCGGTTTAGCCATGATATAGAAGCTTTTAAGGAACAGAAACCGGCTGATTTGGAAGGTGAATGTCCTTTTTTGAAATCTGAAGGGTCTTGTCCTTATGGGCTATCGTGTAGATTTTTAGGTACTCATGAAGAGAGTAAGCCTTTATCTTCTACTGGGTTGGAGAGAAGGTCTGAAGTTAATGGTTTTAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGACTTTCCCCAAGGCGGATGCAATACTCAAAAGTCTTGGCCTTTTGTCTAAGTCAAAAGGGAATGCCTTGGAAAACAAAGATGGTGGTGACAAATGTGTTCAGTCTGATGACATTGGTTCTTGTGTGGTTACGTCTGAGTTGGAAAATAAAGATGGTGTCGACAAATGCAATCAGTCTGATGACGATGATTCTTTTGGGGTGATCGTTGAATCGGACTCTAAGTTAGAAGGCTCCGTAGAGGTTCTAAAAGATGACGATGTCATCAATAGAGAACTTGAATCTGATGTACATTGTCCCCTGAAGAGAAGAAAAACTGCAGAAGATTGTGGTGTTGAGGAGACAAAAACTGAAGGTCCTAAGCTTGATATTGCTGCAACAGGTGTGAGTGTTACTGATCAAAATGTTGACGGAAGCTGCATAAGATCTGAACCAGAGGCAAGAACTGAAGCTATAACCCCAGAAACTGATATAAGCTTGAAATCTCACTCGCGTGAGAAGAAGCTTATTGATTTTAGGGAGAAGTTGTATCTTGCCCCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGCCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCATATCCAGATTCTGTGGCGCGAACAGTTGAACTAATAGAAAAGGAATGTTCAGTAGATTTCATTGATATAAATATGGGCTGCCCTATTGACATTGTTGTGAACAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGCATGAAAAATGTTGTAGAAGTAGCTTCAGGCACGGTTGATATACCAATAACTATCAAGGTTCGGACAGCTTATTTTGAAGGGAAGAACCGTATTGACTCAGTGATAGCAGACTTTAGCTCTTGGGGAGCCAGTGCAGTGACTATACACGGTAGGTCACGGCAACAACGCTATAGCAAGCTTCCTGACTGGGATTACGTATATCAATGTACCAAGGAAGCCCCTAAAAATTTGCAAGTAGTGGGGAATGGAGATGTTTTTTCGTTTGAAGACTGGAACAAGCACAAAACTGAATGCCCTGAGCTTGCTACATGCATGATTGCTCGTGGTGCACTGATTAAACCTTGGATATTTACAGAGATAAAGGAACAGCGACATTGGGACATCAGTTCTGGCGAGCGGTTAAATATTTTCAAAGATTTTGTGCATTTTGGTCTTCAACATTGGGGTTCAGATACCAAAGGAGTGGAGACAACCAGGCGGTTTTTGTTGGAATGGCTTAGCTACACCTGTAGGTACATACCCGTTGGTCTTATGGAGGTTGTTCCACAACGAATAAATTGGCGTCCACCATCTTACTACGGGCGTGATGACCTTGAGACACTGATGGCCTCAGACTCCGCAGCTGACTGGGTGCGCTTATCTGAGATGTTGCTTGGCAAAGTTCCTGATGGCTTTGCTTTTGCCCCGAAGCATAAATCAAATGCTTACGACAGAGCTGAAAATGGCTAA 2121 0.4375 MDGDGGEEDSRHGSSAVTHETVDQLIARCIAPVKHEFLRPPPDRTSSQNDDVSTPKNKAPVLAKEKKSKRQLKRERRQDQKSTKNLCPEISKSGDVNSCRYQDKCRFSHDIEAFKEQKPADLEGECPFLKSEGSCPYGLSCRFLGTHEESKPLSSTGLERRSEVNGFSKDVQKLLWKNKMTFPKADAILKSLGLLSKSKGNALENKDGGDKCVQSDDIGSCVVTSELENKDGVDKCNQSDDDDSFGVIVESDSKLEGSVEVLKDDDVINRELESDVHCPLKRRKTAEDCGVEETKTEGPKLDIAATGVSVTDQNVDGSCIRSEPEARTEAITPETDISLKSHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDSVARTVELIEKECSVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNVVEVASGTVDIPITIKVRTAYFEGKNRIDSVIADFSSWGASAVTIHGRSRQQRYSKLPDWDYVYQCTKEAPKNLQVVGNGDVFSFEDWNKHKTECPELATCMIARGALIKPWIFTEIKEQRHWDISSGERLNIFKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLMEVVPQRINWRPPSYYGRDDLETLMASDSAADWVRLSEMLLGKVPDGFAFAPKHKSNAYDRAENG 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04761 706 Gene3D - 76 156 - -
Vifa2g04761 706 ProSiteProfiles Zinc finger C3H1-type profile. 125 150 IPR000571 GO:0046872
Vifa2g04761 706 MobiDBLite consensus disorder prediction 1 20 - -
Vifa2g04761 706 CDD DUS_like_FMN 354 589 IPR035587 -
Vifa2g04761 706 Gene3D Aldolase class I 349 592 IPR013785 -
Vifa2g04761 706 SMART c3hfinal6 82 111 IPR000571 GO:0046872
Vifa2g04761 706 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Vifa2g04761 706 ProSiteProfiles Zinc finger C3H1-type profile. 81 112 IPR000571 GO:0046872
Vifa2g04761 706 Pfam Dihydrouridine synthase (Dus) 357 591 IPR035587 -
Vifa2g04761 706 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 350 592 - -
Vifa2g04761 706 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 22 700 - -
Vifa2g04761 706 SUPERFAMILY FMN-linked oxidoreductases 354 667 - -
Vifa2g04761 706 Pfam CCCH-type zinc finger 86 110 IPR041367 -
Vifa2g04761 706 MobiDBLite consensus disorder prediction 1 16 - -
Vifa2g04761 706 ProSitePatterns Uncharacterized protein family UPF0034 signature. 438 456 IPR018517 GO:0008033|GO:0017150|GO:0050660
Vifa2g04761 706 MobiDBLite consensus disorder prediction 33 89 - -
Vifa2g04761 706 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 77 156 - -
Vifa2g04761 706 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04761 Vifa-Chr2 1406033701 1406038315 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa2g04761 Dus 2.9e-48 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04761 K05544 - gmx:100783494 1042.34