Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04758 ATGAACGTCGAAGACGACGAACCTCAACCTAACCAATCTCCTCCGCATGCCTCCGATTCGCCGCCGCAACCGCCGAACATCTCAACCAATGCCGACGACGTCCACGACGATGTTTCAAATGTCCCCAACGACGGAGACCCTGAGACAGTGGTTGCCGGTGAGGTTGCAGGTGAGGCGGGCGACGCTGCCGCAAATGCAAGCACGGAGGTTGCAGTTGCTGACGTGGCATCGGTGGAGGGAAGTGAAATGCATGTGATGGATGATGCTTCAATCGAAGATGAAATTGTTGTAGAGGAGAAAGGAAATGATGGAACCGACGCTGATATGGAGTCTGAGAAAGCGAATGAAGGAGGTGGCGTCGATATGGAGTCTGAGAAAGCGAATGAAGGAGGTGGCGTCGATATGGAGTCTGAGAAAGCGAATGAAGGAGGTGACGTCGATATGGAGTCTGAGAAAGCGAATGAAGTAGGTGACGTCGATATGGAGTCTGAGAAAGCGAATGAAGGAGGTGACGTCGATATGGAGTCTGAGAAAGTTAAAGAGGATGGAGCTAATTTGATAGTCCAAGAGGTGGAGGTTCAAGTTGGAGATGACAATACAGATGAAGCTCCTTTGACAGGACAAGAAGAAGAAGTTGATGGAGAGAAGGAAGAAGAAGACGACGAGAAGGAGGAAGAAGACGGAGAGAAGGAGGAAGAAGGAGATGAAATAGAACAAGAGGGTGAAGAACAACAACATGAAGATGATGAAGAACTAGAGCAGGAGCAAGAACAAGAAAAAGATGCTGAAGAAGAAGCTGATGTTGAAGTTGATGGTGATTTGGCAAAAGATAAAGAGGCTGCTGAGGAGATGAAAGTGGCGGAGGAGCAAACTGCCAGTGGTGGAAAGAGGAAGCGTCGAAATGGGAAGAATTCAAAGGCCGGTGGGAGAGTTCCTTCAAAGAAAAAGACTGAAGAAGATGTCTGTTTCATTTGCTTTGATGGAGGTGACCTTGTGCTCTGTGACCACAGGGGTTGTCCCAAGGCTTACCACCCTTCCTGCATTAATCGGGACGAGGCCTTCTTCCGAGCCAAGGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCATCTGTGAGAAGAAGAGTCCACACTACTTCTGTTATACGTGTACATTCTCTTTGTGCAAGGGTTGTATCAAAGATGCTGTTATGTTATGTGCTAGGGGAAACAAGGGATTTTGCGAGACATGCATGAAAACTGTAATGTTGATTGAACAGAATGAGGAGGGAAACACCACGGGACCAGTTGATTTTGATGACAAAAGTAGCTGGGAATATCTTTTCAAGGATTACTATGTAGATCTAAAAGAAAAGCTGTCTCTAACATTTGATGAACTTGCTCAAGCTAAAAACCCTTGGAAGGGATCTGGTAAGCTTCCTTCTAAAGAGGAATCAGCAGATGAACTGTTTGATGCCACCAATGATAAAGTGTCAGATTCAGATAGCTCTTATGAGAATGTAGATTTGGGTCGATCTAAGAAAAGAAAGTCCAAGAGACGTGCAAAGTCTCGTTCCAAACGTGGCGCTGATGGAGCATCTACAGAAGAAAGCTCTGAGTGGGCTTCAAAGGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGATAAATCTATGTTGTCACAATTTGATGTGCATGAGCTTTTGCTAGAATATATTAAAATAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTCTTTGTGATGCAAGGCTTCAAGATTTGTTTGGCAAGCCTAGAGTTGGACATTTTGAAATGTTAAAACTTCTTGAATCCCATTTCTTTCTAAAAGAGGATTCACAGGCTGAAGATCACCAGGGAAGTGTTGTTGATACTGAAGTTAGTCATTTGGAGGGTGATGGCAATGGTGACACTTATACTAAAGCTGGAAAAGATAAGAAACGTAAAAGTCGTAAAAAGGGTGATGGGAGAGGACTTCAATCTAATGTTGATGATTATGCAGCCATTGATAATCATAATATTAATTTAATTTATTTAAGACGCAATTTAGTTGAGGATTTACTTGAAGATATAGATAAGTTTCATGATAGCGCTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGCAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAACAGCAGAGCCATATAAAGTTGGTAAAAAGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAAATTGTATCAATGGATATCATCTCAAATCAGGAGTTCACAGAGGATGAGTGCAAGCGCCTCCGCCAAAGCATAAAATGCGGCCTCATTAATAGGATGACTGTGGGTGACATTCAGGACAAATCATTGACACTTCAGGCAGTTAGAGTAAAAGATTGGCTGGAAGCGGAGATAGTACGGCTAAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGACGCAAAAAAGAGCTTAGAGAATGCGTAGAGAAATTGCAGCTTTTGAAAACCCCTGAAGAACGGCAACGTAGGTTGGAGGAAATTCCAGATATACATGTTGATCCAAAGATGGATCCAAGTTATGAGTCTGATGAAGGAGATGAAATGGAGGATAAACGACAAGAAAACTTCATGAGACCTAGAGGGTCGACTGCGTTTGGAAGGAAGGGGAGAGAAATTGCTTCGCCTAGAAGTGGTTCCATTTCAAGTGATTCTTGGAGTGGAACAAGAAATTATTCTCATGTGAATCAGGAACTCAGCAGAAATTTGTCTAATAAGGGATTTTCTGTCAAAGGTGATGATTTTTCCAATGCTAGTGAGGCTTTAAATGATGCTCAATTGCATCAGGGAAGAGATAGGGAATCACAACTATCTAATAGTCGAGAGAGGCAGAAGCCGCGGTCTTCAAGCTGGGAGAGTGGTGCTAAAAATATCCAGCCATTGGTAACAACCGAGTCTTTTTCTAATGCGGTGTCAGAAGCTGCCACAGCACCATCTTCTGCCGGAGTAGCAGCCCCAGATGTGAAAATTAATGAAACTGAAAAGATGTGGCGATATCAGGATCCATCTGGTAAAGTTCAGGGGCCATTTTCCATGGTGCAACTTCGCAAATGGAATAATACCGGATACTTCCCTACTGATTTGAGGATTTGGAAAGCCACCGAGAAACAAGAGGAGTCTATACTCTTAACGGATGTCTTAGCTGGGAAATTTTCCAAAGAACCGTCCATTGTGGAAAAAACTCCTCCTAAGGCTCAAAACCACTCGTCCTCACTCTCTAGGATGTCTCCTATGGCTGCCCAAGGTTTAACAGGTAAAACTTCTTCATTGGCAGTTGAGGTCCCTAAGAATCCTGGAACTGGTTGGGGTTCTGATACCGGTGTCCGAAATGAATCAACAAATCTTCCTTCGCCTACTCCCCAAACTGCTTCAAGTGGGTCGAAGGAGCATACTTTTGAAAATTGGTCACCAACACCCGTCCAGATGGCTGGGTCTGTCTTTGGAAATTCGTTCCCTAGCGGTATCAGAGGTTTGCAGGCCTCCGTGGCAGTAAACGCACAACCTGGTATGGCTACCGATACTACTCAAGTACACCTCCAAGCAACAGAAATGGCACAGGCTCTGGCTGCATCAAATATGCAAAACCAGATTAGGCATAATTCTCGTGCTGAAGCTCAAGGGTGGGGTCAAAATATGGTTCCAAAACAAGAATCACAGGTCTGGGTAGGCACTCCATCCCAAAGGGTAGAACCAAATAATTCTGCCACCATGCCTGTCCAACCAACTTCCCATGGTCTATGGGGTGATGCTTCATCTGTTCAGAACTCTGTCTCATCTAACATAGGAAATCAAACTGGGAGCTTACCCACACTTGGTTTTCCAGGCATGAGTGCACCTGAGCCTTGGAGTCCACAAGTTGCAGGAAATAAAGCAAATGTCATGGCTCCACCACCGCCCAATGTACCCTGGGGCATTAACATGCCAGCAAATCAGAATATTAACTGGGGTGGTGCTATACCTGCCAATATGAATGTCAACTGGATGCCTGCACAAGGGCCAGCACCAGGAAATTCACTTCCAGGATGGGTAGCTCCTACCCAGGGGCTACCTCCAGTAAATGCAAATGCAGGTTGGGTTGTGCCTGGTCAAGGGCCTGCACCTAGAAGTGCCAATCCTGCTTGGGCTGCATCTGCTGGGAACCCAGGCATGCGGGGAAACGAACAAAGTCATAATGGAGATAGGTTTCCCAACCAAGGGGAACGTGGCACCCGTGGTGGAGATTCTGGTCGTGGGGGTAAACCTTGGAACAGACAGTCACCATTTAGAGGTGGAATCGGAGGAAGAGGAGGGGGTTCTTCTAGGCCTTCCAGCGGAGGACAAAGAAGAATCTGCATATATCATGAGAGTGGACGTTGCCGGAATGGAGCTGCCTGTATTTTCCAACACAATTAA 4464 0.4496 MNVEDDEPQPNQSPPHASDSPPQPPNISTNADDVHDDVSNVPNDGDPETVVAGEVAGEAGDAAANASTEVAVADVASVEGSEMHVMDDASIEDEIVVEEKGNDGTDADMESEKANEGGGVDMESEKANEGGGVDMESEKANEGGDVDMESEKANEVGDVDMESEKANEGGDVDMESEKVKEDGANLIVQEVEVQVGDDNTDEAPLTGQEEEVDGEKEEEDDEKEEEDGEKEEEGDEIEQEGEEQQHEDDEELEQEQEQEKDAEEEADVEVDGDLAKDKEAAEEMKVAEEQTASGGKRKRRNGKNSKAGGRVPSKKKTEEDVCFICFDGGDLVLCDHRGCPKAYHPSCINRDEAFFRAKGKWNCGWHLCSICEKKSPHYFCYTCTFSLCKGCIKDAVMLCARGNKGFCETCMKTVMLIEQNEEGNTTGPVDFDDKSSWEYLFKDYYVDLKEKLSLTFDELAQAKNPWKGSGKLPSKEESADELFDATNDKVSDSDSSYENVDLGRSKKRKSKRRAKSRSKRGADGASTEESSEWASKELLEFVMHMRNGDKSMLSQFDVHELLLEYIKINKLRDPRRKSQILCDARLQDLFGKPRVGHFEMLKLLESHFFLKEDSQAEDHQGSVVDTEVSHLEGDGNGDTYTKAGKDKKRKSRKKGDGRGLQSNVDDYAAIDNHNINLIYLRRNLVEDLLEDIDKFHDSAVGSFVRIRISGSGQKQDLYRLVQVVGTCKTAEPYKVGKKMTDILLEILNLNKTEIVSMDIISNQEFTEDECKRLRQSIKCGLINRMTVGDIQDKSLTLQAVRVKDWLEAEIVRLSHLRDRASEKGRKKELRECVEKLQLLKTPEERQRRLEEIPDIHVDPKMDPSYESDEGDEMEDKRQENFMRPRGSTAFGRKGREIASPRSGSISSDSWSGTRNYSHVNQELSRNLSNKGFSVKGDDFSNASEALNDAQLHQGRDRESQLSNSRERQKPRSSSWESGAKNIQPLVTTESFSNAVSEAATAPSSAGVAAPDVKINETEKMWRYQDPSGKVQGPFSMVQLRKWNNTGYFPTDLRIWKATEKQEESILLTDVLAGKFSKEPSIVEKTPPKAQNHSSSLSRMSPMAAQGLTGKTSSLAVEVPKNPGTGWGSDTGVRNESTNLPSPTPQTASSGSKEHTFENWSPTPVQMAGSVFGNSFPSGIRGLQASVAVNAQPGMATDTTQVHLQATEMAQALAASNMQNQIRHNSRAEAQGWGQNMVPKQESQVWVGTPSQRVEPNNSATMPVQPTSHGLWGDASSVQNSVSSNIGNQTGSLPTLGFPGMSAPEPWSPQVAGNKANVMAPPPPNVPWGINMPANQNINWGGAIPANMNVNWMPAQGPAPGNSLPGWVAPTQGLPPVNANAGWVVPGQGPAPRSANPAWAASAGNPGMRGNEQSHNGDRFPNQGERGTRGGDSGRGGKPWNRQSPFRGGIGGRGGGSSRPSSGGQRRICIYHESGRCRNGAACIFQHN 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 1115 1156 - -
Vifa2g04758 1487 PANTHER UNCHARACTERIZED 154 1486 - -
Vifa2g04758 1487 SMART rtf1 669 779 IPR004343 GO:0003677
Vifa2g04758 1487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 415 IPR013083 -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 900 915 - -
Vifa2g04758 1487 Gene3D - 671 799 IPR036128 GO:0003677
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 1406 1420 - -
Vifa2g04758 1487 Coils Coil 245 269 - -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 1385 1464 - -
Vifa2g04758 1487 ProSiteProfiles SWIB/MDM2 domain profile. 527 610 IPR003121 -
Vifa2g04758 1487 CDD SWIB-MDM2_like 533 608 - -
Vifa2g04758 1487 ProSiteProfiles Zinc finger PHD-type profile. 319 386 IPR019787 -
Vifa2g04758 1487 SMART gyf_5 1019 1074 IPR003169 GO:0005515
Vifa2g04758 1487 Pfam SWIB/MDM2 domain 535 608 IPR003121 -
Vifa2g04758 1487 ProSitePatterns Zinc finger PHD-type signature. 322 383 IPR019786 -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 1127 1156 - -
Vifa2g04758 1487 SMART PHD_3 321 367 IPR001965 -
Vifa2g04758 1487 FunFam Zinc finger CCCH domain-containing protein 19 1020 1077 - -
Vifa2g04758 1487 SUPERFAMILY SWIB/MDM2 domain 533 609 IPR036885 -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 619 659 - -
Vifa2g04758 1487 CDD GYF 1018 1073 IPR003169 GO:0005515
Vifa2g04758 1487 SUPERFAMILY FYVE/PHD zinc finger 317 368 IPR011011 -
Vifa2g04758 1487 CDD PHD5_NSD 321 366 - -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 844 882 - -
Vifa2g04758 1487 Pfam GYF domain 1021 1061 IPR003169 GO:0005515
Vifa2g04758 1487 SMART swib_2 542 613 IPR019835 -
Vifa2g04758 1487 FunFam Zinc finger CCCH domain-containing protein 19 670 799 - -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 483 529 - -
Vifa2g04758 1487 FunFam Zinc finger CCCH domain-containing protein 19 311 412 - -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 203 270 - -
Vifa2g04758 1487 Pfam Plus-3 domain 674 777 IPR004343 GO:0003677
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 271 296 - -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 948 981 - -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 99 313 - -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 99 185 - -
Vifa2g04758 1487 Coils Coil 205 236 - -
Vifa2g04758 1487 SUPERFAMILY GYF domain 1013 1071 IPR035445 -
Vifa2g04758 1487 Gene3D SWIB/MDM2 domain 522 618 IPR036885 -
Vifa2g04758 1487 CDD Bbox1 367 394 - -
Vifa2g04758 1487 ProSiteProfiles Plus3 domain profile. 669 802 IPR004343 GO:0003677
Vifa2g04758 1487 Gene3D - 1019 1078 IPR035445 -
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 844 915 - -
Vifa2g04758 1487 ProSiteProfiles GYF domain profile. 1018 1072 IPR003169 GO:0005515
Vifa2g04758 1487 SUPERFAMILY Plus3-like 670 798 IPR036128 GO:0003677
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 950 973 - -
Vifa2g04758 1487 ProSiteProfiles Zinc finger C3H1-type profile. 1462 1487 IPR000571 GO:0046872
Vifa2g04758 1487 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04758 Vifa-Chr2 1404532496 1404541464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04758 319 391 PHD Transcription Factor Family AT5G36670 37.333 3.76e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Vifa2g04758 Plus-3 6.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04758 - - aprc:113865790 1792.32