Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04755 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGATCAACCCAAGCAACAAGGTTGACTGCCGCCCGACAGATAGGGGAGATTGCGAAGTTGCACCCTCAAGACTTAACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAAATGGGATACAAGAGTTGCTGCTGCTCATGCAATTGGGTCCATTGCTGAGAATGTTAAGCGCATAAGCTTGAATGAACTTATTTCTTCTGTTGTAACAAAAATGTCTGAGAGCGGGATATCATGCAGTGTTGAGGATCTGTGTGCATGGCCTTATTTACAAGCAAAAATTACAGGAAGCTCATTTAGAAGCTTTGATTTGAATAAGGTGCTTGAATTTGGAGCTTTATTAGCATCAGGAGGGCAGGAGTACGATATTGGAAGCGATAATATAAAGAACCCAAGGGAGCGTTTGGTTCGCCAAAAGCAAAATCTCCGGCGCCGTTTGGGTTTAGATGTCTGCGAACAATTTATGGATATCAATGATGTAATTAGAGATGAAGATCTTTTGGCACATAAATCAGACCCGTATCTCAACGGCATGGATCATAAAGTTTTTACATCTTGTTCTGTACATAACATTCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCAAAGTGGCCGAGTGCTAGAGAACTGAATCTTTTAAAGCGCAAAGCAAAAAATACCCCAAAGGACCAAACAAAGAGCTGGTGCGAAGATGGAACAGAGGCTTCAGGCACTCAAAATTTGACTTCAAAAGGCACGTGTCCTGATTCGGTAAATCATAGTAAGGCATTCACACAAGTTAATCACGACGAATACGGATTTGAGCATGATGAAGATGGACAATGGCCTTTCAGCACTTTTGTCGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGGCATGGTAGTGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGAGTGTTGAAACACAACCCAAACTTGGGTGGGACTTCATTTGTGGAATTAGAAAACAAAAATACATCAAACGTGTTGAAGAGAGAAAGGGATATTGATTTAAATATGCAAGTTTCAGCAGATGATTGTGTCTTGAACATGAAGAAGCCAAAACTTGAAGATGTATCATTACCAACATCTATGGATAGCGTGATGACTTGCAGTAATGGAGGTGACACTGAAAACATCATTAGTTCTGAAACACAGGGTTGCACTTTACCTATAGACTATGGTAATGGGAAATTTGATGGTAGTTCTGTTGACATGAATGTGGAAACTCACTATGATGGTTTACATGATGCAAACAAGCAACCTGCTAATATAGCAGATCAGAAAGGTTATTCTGATGACCAAAAGATTCTCTCTGGAAACCCTAATATGCTGAGAAATCTTCCTCAGAATTGTGAGCTGATGAACTCCGTCAAAGTGGCTAGAAGTTCCTGGCTTCGAAACTGTGACTTTCTTCATGACTGTGTCATTCGCTTTTTGTGTGTATTGTCACTTGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCACCAGTGCGTGAAACCTGTGCACAGGCATTAGGGGCTGCATTTAAGTATATGCACGCAGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGTCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTAGTTGCTGTACGGCAGGAGATGCTTTCTGATTTGCTTGGACGTGTTCTTCCTGCCTGTAAATCTGGGTTGGAGGACCCCGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACACTACATTCAATTGTGATGCTATTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACTAGCAGTGTAATGAATCTGCTTGCAGAGATCTATTCTCATGAAGAGATGGTCCCAAAGATGTATAAACTTTTTAAATTGGAAGACAGAGAAATTGAAAATGGAGCCGGTGCTTCTGGTGATGATGTGGAAGAAAATCCTTTTGTACTTTCAACTCTGGCGCCACGGTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTATTCAGCAATACGAACTCTGGAAAGGTTACTTGAAGCTGGATATAAGAGACGCATGTCTGAGCTCTCTAGTGCTTCATTTTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATTGTCTTTCAGAATTTACTATTGGAAACAAATGAAGAGGTTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCATTGTTCAGTGTTCTCTGGAGGACCTGGAGACAGCTGGAATGTCTTACATGACTTCCTGGATAGAACTTGCATCTACACCTTTTGGTTCTGCTTTAGATGCCTCAAAGATGTTTTGGCCTGTTGCATTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCTGTGAGGATTGAAAATGAATATGGCGGAAATCTAGGTCTTGAATCTACAATATCAACTATTCCACAGGATAGAAATGGAGATGTTCCTACGAATTCTGTCAAGATAATTGTTGGTGCTGAGGTCGACACATCTGTAACTCGTACCCGGGTAGTTACAGCAACTGCTTTGGGAATTTTTGCCTCTAAACTTCCAGAGGGTTCTTTAAAAAATGTTATTGATCCACTGTGGAGTTCAATAACCTCTCTTTCTGGTGTCCAGCGCCAGGTTGCATCCATGATTCTTATTTCTTGGTTCAAGGAGGTTAGGACCAGGAATTTGTCTGAAAGCCTCAATGGTATTCCTGCTTCCCTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCTGCGTTCCCAACAAAAGGTTCACTTATTCCTTATGCCGAGCTTTCAAGAACGTATTCGAAGATGCGTAGTGAGGCTGGTCAATTGCTAAGTGCAGTCAAATCTTCTGGTATGTTTAGCGAGTTATTGACAACAACCAATATTGAGTTGGATAACTTGAGTGTAGATGATGCCATTGGTTTTGCATCAAAAATTCCAGCATTGTGTAATGATAGTCCTGCAAATGAATCTTCAAGAAAGAACACTATGGATGATATTGAATCCTCAAAACAGAGGCTTTTGACAACTTCTGGCTATTTGAAATGTGTTCAGTGTAATTTGCATGTTACGGTTACATCTGCAGTTGCAGCTGCAGTCGTGTGGATGTCTGAGTTTCCTACTCGTCTCACCCCCATTATTTTGCCTTTGATGGCTTCGATCAGACGAGAACAGGAGGAAATACTGCAAATTAAGTCAGCTGAGGCTCTCGCTGAGTTAATATATCACTGTGTTTCACGGAGACCTTGCCCCAACGATAAATTAATTAAGAATATATGTAGTTTGACTTGCATGGATCCCTCTGAGACCCCTCAAGCTAAATCCATTTGTTCCATAGAGAGTATTGATGACCATGGTCTTCTGTCTTTCAGAACTCCTGTGACTAAACAGAAGTCAAAGGTGCATGTGCTGACTGGTGAGGATCGATCAAAGGTAGAGGGGTTTATAAGTAGACGGGGATCTGAGCTATCATTGAGGCTTCTGTGTGAGAAGTTCGGTGTTTTGCTCTTTGATAAGCTTCCTAAGCTGTGGGATTGTCTTACTGAGGTTCTTAAGCCGAGCTCCTCCGAATCTCTAATTGCCGCTAATGAAAAGCAAGCTATGGTAGCAATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTCGTGCGATCTATTGCTCCCTTCTTAAGTGAAGAGTTGAAGCCAAAGCTTTTGACACTTCTTTCATCCGTTTTTAAATGTGTGAAGCATTCTCATGTGGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCTCAGTCAATGATGGTGAAAGTCATGGGCGCTGTGGTTGAAAATGCTATCCCTATGCTGGAAGATGCAACGTCAGTTCATGCTCGACAAGGATCCGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTTGGTGTAGAGTTGGTACCTTATGCTCCTCTGCTGGTGGTTCCCCTTTTACGATGCATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGCTTTGCTGCCCTTGTACCTTTACTTCCTTTAGCACGCGGTGTTCCTCAACCAATTGGAATAGGGGAAGGTATATCTAAAAATGCTGAAGATTTGCGTTTTCTGGAGCAGCTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGATATCAACAGGAAGGCATAAATTGGTTAGCTTTTCTGAAACGTTTTAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCGGCAATTGTGGCCTCTGATATAGTTGAGCATCAAACTCAAATCACCAATGAGGATCTTCTGCCATCTTTAATTATTTGCCCGTCAACACTAGTTGGACATTGGGCCTTTGAGATAGAAAAGTATATCGATGTTTCAGTTATATCTAGTCTTCAGTATGCTGGTTCTGCTCAGGATCGAGTGCTTCTTAGAGAGAGTTTTTGCAAGCATAATGTTATTATAACATCATATGATGTTGTCCGGAAAGATATTGATTATTTGGGACAGCAGCTGTGGAACTACTGTATTTTAGATGAAGGACATATAATAAAGAATGCTAAGTCTAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAACATTATGGACTTGTGGTCCCTTTTTGATTTTTTGATGCCTGGGTTTCTTGGAACAGATAGACAGTTCCAAGGCACATATGGAAAACCACTTATAGCTGCAAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCCGGAGCACTTGCCATGGAAGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGAAGGACAAAGGATGAAGTCTTGTCTGATCTGCCTGAGAAAATAATTCAAGACAGATACTGCGATTTGAGCACTGTACAACTTAAACTATACGAACAGTTTTCTGGTTCTCGTGCAAAACAAGAAATGTCATCGATTGTAACAACAAATGAGTCAGCTGCTGCTGAAGGAAGTAGCAGTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCGCTCCAATACTTGCTAAAACTCTGCAGTCATCCATTGCTTGTAATTGGTGGGAAGATTCCAGATTCACTCTCTACCATCCTTTTGGAACTATTTCCTGCTGGCTCTGATGTCATTTCAGAACTTCACAAACTCCATCACTCTCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAATTGATGCTTCAGGTTCTGAGGCTGCTGCTGGCATTGGGCAGCATAGGGTTTTGATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGACACACATGAAAAATGTCACATATTTGCGGCTAGACGGATCAGTTGAGACCGATAAACGGTTTGAAATTGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTGCTTACGACCCATGTGGGCGGGCTTGGTTTGAACCTTACATCTGCAGATACCCTTGTATTTGTGGAGCATGACTGGAATCCTATGCGCGACCTTCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAGAAAGTAGTTAATGTTCACCGTCTGATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAAGTTTAAAGTGTCAGTGGCTAATGCTGTCATTAATGCGGAAAATGCTAGTTTGAAAACAATGAATACAGATCAGCTGCTTGATTTATTTGCATCAGCAGAAATCCCGAAGAAGGGGTCTTCTGCTGTGAAGAGTTCAGAAGACAACGCTGATGGAGAAATAGGCAGTGGAAAGGGATTGAAAGCAATACTTGGGGGATTGGAGGATCTATGGGACCAATCACAATATACAGAAGAGTACAATTTGAGTCAATTTTTGGCAAAGCTTAATGGTTAA 6138 0.4145 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKLHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAENVKRISLNELISSVVTKMSESGISCSVEDLCAWPYLQAKITGSSFRSFDLNKVLEFGALLASGGQEYDIGSDNIKNPRERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLLAHKSDPYLNGMDHKVFTSCSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAKNTPKDQTKSWCEDGTEASGTQNLTSKGTCPDSVNHSKAFTQVNHDEYGFEHDEDGQWPFSTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKHNPNLGGTSFVELENKNTSNVLKRERDIDLNMQVSADDCVLNMKKPKLEDVSLPTSMDSVMTCSNGGDTENIISSETQGCTLPIDYGNGKFDGSSVDMNVETHYDGLHDANKQPANIADQKGYSDDQKILSGNPNMLRNLPQNCELMNSVKVARSSWLRNCDFLHDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHAALVNETLNILLKMQCSPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHEEMVPKMYKLFKLEDREIENGAGASGDDVEENPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRRMSELSSASFWPSSIFGDTLRIVFQNLLLETNEEVLQCSERVWSLIVQCSLEDLETAGMSYMTSWIELASTPFGSALDASKMFWPVAFPRKSQFRAAAKMRAVRIENEYGGNLGLESTISTIPQDRNGDVPTNSVKIIVGAEVDTSVTRTRVVTATALGIFASKLPEGSLKNVIDPLWSSITSLSGVQRQVASMILISWFKEVRTRNLSESLNGIPASLKDWLLDLLACSDPAFPTKGSLIPYAELSRTYSKMRSEAGQLLSAVKSSGMFSELLTTTNIELDNLSVDDAIGFASKIPALCNDSPANESSRKNTMDDIESSKQRLLTTSGYLKCVQCNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQIKSAEALAELIYHCVSRRPCPNDKLIKNICSLTCMDPSETPQAKSICSIESIDDHGLLSFRTPVTKQKSKVHVLTGEDRSKVEGFISRRGSELSLRLLCEKFGVLLFDKLPKLWDCLTEVLKPSSSESLIAANEKQAMVAIESVSDPQTLINNIQVVRSIAPFLSEELKPKLLTLLSSVFKCVKHSHVAVRLAASRCITSMAQSMMVKVMGAVVENAIPMLEDATSVHARQGSGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGVPQPIGIGEGISKNAEDLRFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIVEHQTQITNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYAGSAQDRVLLRESFCKHNVIITSYDVVRKDIDYLGQQLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQGTYGKPLIAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSTVQLKLYEQFSGSRAKQEMSSIVTTNESAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVIGGKIPDSLSTILLELFPAGSDVISELHKLHHSPKLVALHEILEECGIGIDASGSEAAAGIGQHRVLIFAQHKAFLDIIEKDLFQTHMKNVTYLRLDGSVETDKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANAVINAENASLKTMNTDQLLDLFASAEIPKKGSSAVKSSEDNADGEIGSGKGLKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG 2045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04755 2045 FunFam TATA-binding protein-associated factor BTAF1 1199 1410 - -
Vifa2g04755 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1430 1684 IPR027417 -
Vifa2g04755 2045 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1422 1683 - -
Vifa2g04755 2045 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Vifa2g04755 2045 Pfam Domain of unknown function (DUF3535) 781 1235 IPR022707 -
Vifa2g04755 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1464 1634 IPR014001 -
Vifa2g04755 2045 Gene3D - 507 689 IPR011989 -
Vifa2g04755 2045 FunFam TATA-binding protein-associated factor 172 1694 2011 - -
Vifa2g04755 2045 CDD SF2_C_SNF 1799 1941 - -
Vifa2g04755 2045 Gene3D - 1425 1683 IPR038718 -
Vifa2g04755 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1820 1980 IPR001650 -
Vifa2g04755 2045 MobiDBLite consensus disorder prediction 251 269 - -
Vifa2g04755 2045 SUPERFAMILY ARM repeat 6 1491 IPR016024 -
Vifa2g04755 2045 Pfam Helicase conserved C-terminal domain 1830 1930 IPR001650 -
Vifa2g04755 2045 MobiDBLite consensus disorder prediction 238 269 - -
Vifa2g04755 2045 Gene3D - 4 95 IPR011989 -
Vifa2g04755 2045 Gene3D - 1694 2008 IPR027417 -
Vifa2g04755 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1685 1986 IPR027417 -
Vifa2g04755 2045 Pfam SNF2-related domain 1470 1766 IPR000330 GO:0005524|GO:0140658
Vifa2g04755 2045 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2044 IPR044972 GO:0003677|GO:0016887|GO:0017025
Vifa2g04755 2045 SMART helicmild6 1844 1930 IPR001650 -
Vifa2g04755 2045 FunFam TATA-binding protein-associated factor BTAF1 507 687 - -
Vifa2g04755 2045 CDD DEXHc_Mot1 1452 1684 IPR044078 GO:0005524
Vifa2g04755 2045 Gene3D - 1096 1410 IPR011989 -
Vifa2g04755 2045 SMART ultradead3 1448 1642 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04755 Vifa-Chr2 1402564157 1402584063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04755 1447 1985 RAD5 or RAD16-like Gene Family AT1G02670 26.254 7.54e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa2g04755 DUF3535 4.5e-101 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04755 K15192 - gmx:100777977 3422.48