Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04754 ATGGAGTTTGCGGTAGCAAAAGCTTTGAAACCGAGTTTACGGAGGGAGTTTGTTTTTCAACAAACGCTTGGTGAGGAACTTTTTAGCTTTAACTCCAGCGCGGTGGTTGCCGGTGAAGATTTCTCAGTCGACGACCTCCTTGACTTCTCCAACGGCGATGTTATTCACTATGAACAACAACATAACGAAGACGAAGAAGATTCCGAAGAAAAAGATAGTTTATCTCTTTCCTCTCACTCGCTTTCGGAAGATAGCAACTCCAATTCCACCGACGCTTCCTATGATTCCATTTTCTCAACTGAATTACTCGTTCCGGATGATGACGTGGCAGGTCTTGAATGGGTTTCTCACTTCGTAGATGATTCTCTACCAGAGCTTTCTCTTCTCTACCCGGTTCATGTTCAAACCAAGGCGTATCCTCAAAATAAACCGAACCATGAAAAAATTACCAGAAAAACCAGAACCGTCAAGAGCAGAAAACCAAACCCTCAGGCCTGGGCTTTTAGGTCTTTGATTTTACGTCCGTTTTTTCCGTCTACAGTTTTCGGAGAGCCGCCAGTGAAGAAACAGAAGAAAAAGGTTCAGGCTCAGTCCCAGGCCCAAGTTGACGGGGTTGAAGCCCAAGAGGAGACCCATTTACAGCGACGGTGTAGTCATTGCCAAGTGCAGAAGACGCCGCAGTGGAGAACCGGTCCGTTAGGAGCGAAAACCCTGTGTAACGCGTGTGGGGTTCGGTATAAATCCGGTAGGCTTTTTTCGGAGTATAGACCTGCTTGTAGCCCAACTTTTAGCAGCGGAATTCATTCCAATAGCCACCGGAAAGTGTTGGAGATGAGGAAGAGAAAAGGGATGGTTGGACCGGAGTCCGGTTTGTCGGGTCAGACCCAATTAGTCACAAGTTGCTGA 906 0.4702 MEFAVAKALKPSLRREFVFQQTLGEELFSFNSSAVVAGEDFSVDDLLDFSNGDVIHYEQQHNEDEEDSEEKDSLSLSSHSLSEDSNSNSTDASYDSIFSTELLVPDDDVAGLEWVSHFVDDSLPELSLLYPVHVQTKAYPQNKPNHEKITRKTRTVKSRKPNPQAWAFRSLILRPFFPSTVFGEPPVKKQKKKVQAQSQAQVDGVEAQEETHLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSGIHSNSHRKVLEMRKRKGMVGPESGLSGQTQLVTSC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04754 301 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Vifa2g04754 301 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Vifa2g04754 301 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Vifa2g04754 301 Gene3D - 207 283 IPR013088 GO:0006355|GO:0008270
Vifa2g04754 301 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Vifa2g04754 301 FunFam GATA transcription factor 207 292 - -
Vifa2g04754 301 PIRSF Txn_fac_GATA_plant 24 300 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vifa2g04754 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 271 - -
Vifa2g04754 301 PANTHER GATA TRANSCRIPTION FACTOR 35 285 - -
Vifa2g04754 301 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Vifa2g04754 301 MobiDBLite consensus disorder prediction 78 92 - -
Vifa2g04754 301 MobiDBLite consensus disorder prediction 59 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04754 Vifa-Chr2 1401832001 1401832996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04754 40 282 C2C2-Gata Transcription Factor Family AT4G36240 45.020 3.92e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa2g04754 GATA 9.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04754 - - gmx:100808242 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04754 2 1401832001 1401832996 Vifa2g04754 2 1401832001 1401832996 ECH
Vifa2g04754 2 1401832001 1401832996 Vifa6g01126 6 365505127 365506139 ECH