Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04741 ATGAAGATCCAATGTGATGTTTGTGAAAAAGCTGAGGCTTCTATGTTTTGTCCTTCAGATGAAGCTGCTCTTTGTCATGGATGTGATTTTACTATCCACCATGCTAACAAACTTGCAACCAAACATTCTCGTTTCCCTCTTGTCCACCTCAACTCCAAGGACTACCCTCTTTGTGATATCTGTCAAGAGAGGCGTGGATATCTATTTTGCCAAGAAGATAGAGCGATTCTATGCAGAGAATGCGACGTTCCAATCCATAGAGCAAATGAACATACACAGAAACATAGCAGGTTTCTTCTCAGTGGGGTGAAGCTTTCAAGCAATTCTATGGACACAGATACATCATCCACCAATATCGGTTCCTGGTATTCGAAACCAAACATAATACCGAGATCAGTTTCCAATGAAAATGCGAGTTCTTCTGGTATGGTTGAAGACAACATGGCTAGTGACACTGGTTCAGTTTCAACAAGCAGCATTTCTGAATACTTGACAGAAACAATACCTGGTTACTGTTTTGAAGATTTTCTTGATGCTTCATTCCCACCAAATGGTTTCTGTAAGAATAATTATTCAACACTTCAGCACCAAGATCTTCATGTTAACAAGTTTAAGGATGGAGTTAAGGAAATTCAAGAAGTTTATGGATGTTCAGTCCCAGGAACTGGTGCTACATTCTTAAAAAAATCTAGAAACTGCTTGTAA 705 0.3915 MKIQCDVCEKAEASMFCPSDEAALCHGCDFTIHHANKLATKHSRFPLVHLNSKDYPLCDICQERRGYLFCQEDRAILCRECDVPIHRANEHTQKHSRFLLSGVKLSSNSMDTDTSSTNIGSWYSKPNIIPRSVSNENASSSGMVEDNMASDTGSVSTSSISEYLTETIPGYCFEDFLDASFPPNGFCKNNYSTLQHQDLHVNKFKDGVKEIQEVYGCSVPGTGATFLKKSRNCL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04741 234 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 196 - -
Vifa2g04741 234 FunFam B-box zinc finger protein 21 1 98 - -
Vifa2g04741 234 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Vifa2g04741 234 CDD Bbox1_BBX-like 5 47 - -
Vifa2g04741 234 CDD Bbox1_BBX-like 57 100 - -
Vifa2g04741 234 Gene3D Classic Zinc Finger 1 97 - -
Vifa2g04741 234 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vifa2g04741 234 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vifa2g04741 234 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vifa2g04741 234 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04741 Vifa-Chr2 1397196702 1397197845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04741 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 49.029 4.52e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vifa2g04741 zf-B_box 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04741 - - tpra:123898275 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04741 2 1397196702 1397197845 Vifa2g04741 2 1397196702 1397197845 ECH