Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04719 ATGTCCAGTGCACCCATTACTCACATCATTGAGATTGATGTCGGAGTCGATTTATCAAATGCTCTCTTTGAATTAGCTCAGCATCGAGGGAGATCCATTAGTGTCCTTAATGGTAGAGGAATGGTAGAGAAAGTCACACTTCGTCAAGCCACAGGGAGAATCGTAACCCATCAAGGAAGGTTCAGTATAATCTCAATCTCTGGGACAATCATTCCATCATCAACATTGGAGAGTGCAGGAGAATTAGAAGTCAACTTATCAACCCCTGCATTTGAGGTGATAAGAGGGATTATGATTTCTCCTCTAGTGGCCTCAAGTCCCGTGATACTGACTGTTGTATCATCTCCAATTACTGCAGTTTAA 363 0.4242 MSSAPITHIIEIDVGVDLSNALFELAQHRGRSISVLNGRGMVEKVTLRQATGRIVTHQGRFSIISISGTIIPSSTLESAGELEVNLSTPAFEVIRGIMISPLVASSPVILTVVSSPITAV 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04719 120 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 114 IPR014476 GO:0003680
Vifa2g04719 120 Pfam Plants and Prokaryotes Conserved (PCC) domain 7 114 IPR005175 -
Vifa2g04719 120 Gene3D - 7 119 - -
Vifa2g04719 120 ProSiteProfiles PPC domain profile profile. 2 120 IPR005175 -
Vifa2g04719 120 SUPERFAMILY AF0104/ALDC/Ptd012-like 7 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04719 Vifa-Chr2 1391611755 1391612117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04719 7 114 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 37.815 2.20e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04719 - - cam:101492608 99.3673