Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04717 ATGTCATCCTTCATTGTCATTTGTTGCAACATGTCCAATGCACTCATTACTCACATCATTGAGATTGATGTCGGAGTTGATTTGTCAAATGCTCTCATAGAATTAGCTCAACGTCAAGGGAGATCCATTAGTGTCCTTAATGGTAGAGGAATGGTGGAGCAAGTCACGCTTCGTCAAGCCACAGGGAGAATCGTAACCCATCAAGGAAGGTTCAATAAAATCTCAATCTCTGGGACAATCATCCCATCATCAACATTGGAGAGTGTAGGAGAATTAGAAGTCAACCTATCAACCCCTGCATTTGAGGTGATAGGAGGGATTGTGATGTCTCCTCTAGTGGCCTCAAGTCCTGTGATATTGACTGTTGTATCATCTCTTATCACGGCAGTTTAA 393 0.4249 MSSFIVICCNMSNALITHIIEIDVGVDLSNALIELAQRQGRSISVLNGRGMVEQVTLRQATGRIVTHQGRFNKISISGTIIPSSTLESVGELEVNLSTPAFEVIGGIVMSPLVASSPVILTVVSSLITAV 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04717 130 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 124 IPR014476 GO:0003680
Vifa2g04717 130 Gene3D - 17 128 - -
Vifa2g04717 130 CDD DUF296 17 115 IPR005175 -
Vifa2g04717 130 ProSiteProfiles PPC domain profile profile. 12 130 IPR005175 -
Vifa2g04717 130 SUPERFAMILY AF0104/ALDC/Ptd012-like 15 124 - -
Vifa2g04717 130 Pfam Plants and Prokaryotes Conserved (PCC) domain 17 124 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04717 Vifa-Chr2 1391490615 1391491007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04717 5 124 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 36.641 5.95e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04717 - - cam:101492608 105.145