Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04704 ATGATATTGCAGGAACGATCTGACACCGACCAGAAAACTGATTACAATTTTGAAGGAAGATATGATCTAGTTAGGTTCATTAAGACAGTGCAAAAAGTGGGGCTCTATGTTAATCTTCGCATTGGACCTTATGTTTGCGCCGAGTGGAACTTTGGGTTTACCGAATTTGGTGGCCCGATTCACCAGCGACCAGTTCAAGATCTGGCATTTGCAGTTGTTCGTTTCATTCAGAAGGGCGGATCATATGTGAATTACTACATGACTGTTGCGTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTTATAAGCCTTTTAGAGAGATTCTATGACCCTGATTCTGGACATGTGTACCTCGATGGAGTGGATATCACAAAGTTCAGATTAAGCTGGTTGAGGCAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAACGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAGGGAGGTGCTACCGAGGATGAGATAATTGCAGCAGCTAATGCAGCCAATGCACACAGCTTCATAAGTTCTCTTCCAAATGGTTATGAAACCTCTGTTGGGGAAAGAGGCACACAACTATCAGGCGGACAAAAGCAACGTATTGCTATTGCAAGAGCCATGCTGAAAAACCCGAAAATACTTTTGCTTGATGAGGCGACAAGAGCGTATAGTTCAAGAGCATTTTATTCACTATACCTCTACCAAGATCATCCACTGCTTTTTGTGTCTTCTTATTTATATCCTCATCACTCATTTTACCTAAACATTTCTCAACCTCAGCAATCCTTAACCTTTCAGCATAAGCTCTCAGTTTCTTGA 834 0.4197 MILQERSDTDQKTDYNFEGRYDLVRFIKTVQKVGLYVNLRIGPYVCAEWNFGFTEFGGPIHQRPVQDLAFAVVRFIQKGGSYVNYYMTVALVGESGSGKSTVISLLERFYDPDSGHVYLDGVDITKFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDEIIAAANAANAHSFISSLPNGYETSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATRAYSSRAFYSLYLYQDHPLLFVSSYLYPHHSFYLNISQPQQSLTFQHKLSVS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04704 277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 229 IPR027417 -
Vifa2g04704 277 ProSitePatterns ABC transporters family signature. 198 212 IPR017871 GO:0005524|GO:0016887
Vifa2g04704 277 Pfam Glycosyl hydrolases family 35 11 52 IPR031330 -
Vifa2g04704 277 PANTHER ABC TRANSPORTER B FAMILY 87 227 IPR039421 -
Vifa2g04704 277 Gene3D - 87 227 IPR027417 -
Vifa2g04704 277 Pfam ABC transporter 87 225 IPR003439 GO:0005524
Vifa2g04704 277 SMART AAA_5 85 272 IPR003593 GO:0016887
Vifa2g04704 277 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 60 273 IPR003439 GO:0005524
Vifa2g04704 277 SUPERFAMILY (Trans)glycosidases 13 52 IPR017853 -
Vifa2g04704 277 Gene3D Glycosidases 9 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04704 Vifa-Chr2 1387601154 1387612764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04704 88 255 Calmodulin-binding Proteins AT2G36910 54.762 4.00e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04704 K05658 - gmx:100801771 240.35