Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04698 ATGTTGCACTGTTTGAATGCTTCCGGGAATTTACCTACTGAGAGTTGTTCATCAGACATAACAGTACTGGAAAGACAAACCGAAAGAATGAAGTGGCAACAACAACAACAACAACATCATCAAGGTTACTTCAAGAGTCCTATGTTTTGTTCTTCTGTTCAACAAGTTCAGAATTCTCAAGACTTAGTGGCTCTTCAAATTCCATCTGCAATTTCAAGAACTTTCAGCTCTCCACCTGTTCTCGTCGATGCCAAATTCATTGATTCTACGATCGAGAAAGAGAATTGTTCTAAGAAGAGGAAATATGAAAAGGCACATCATAATCATAAGCTCAAGGTTGTTGATGAATTTGAGAATAAAGAAAAGAGGATTAAACTTGGTGCTGAAGATGGTGAATCGAAAATCACAGGGTACCATAGCACCAAAAAGAATACAAATAGCAACAAGAACAACAAAGAAAACTCTACAGCAGCAGAAGGTACTTCAAACTCAAAGGGGAATTCAAAAGCTTCTGAGAATCAAAAACTTGACTACATTCATGTTCGAGCACGTCGCGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAGTTAGAAGGGAAAAGATTAGTGAAAGAATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATCATCAATTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCTACTGTTAATCCAAGGCTTGATTTCAATATTGAAGATTTGTTTGAAAAAGAGGTGTTTCCAACTTGTGATTCAAATGCAACTTTTCAAGCTATGGGAATTTCATCAGAATTGAATAATACCAACCCATATCTTCAGTTCAATTCACCACATCAATTTGTTTCTTATGCTGGATTAGAGGCTGGAATGAACCCTATAGATATGGGGCTAAAGAGGAGCATAAGTGCCCCTGTGTCCATTCCTGAGACTTTTATTGATTCTTCTTCTTTCCCTCAAATTCTACCTTCTACAACATGGGAAGGTGATTTTCAAAACCTTTACAACATGAATTTTGATCAAGCAAGAGCAACATCTTTTCCTCCCCAAACTCAGTTTTTCACAGGTCTAGTTGAAGCTAGCAATCTAAAGATCGAGATGCAGTAG 1167 0.3745 MLHCLNASGNLPTESCSSDITVLERQTERMKWQQQQQQHHQGYFKSPMFCSSVQQVQNSQDLVALQIPSAISRTFSSPPVLVDAKFIDSTIEKENCSKKRKYEKAHHNHKLKVVDEFENKEKRIKLGAEDGESKITGYHSTKKNTNSNKNNKENSTAAEGTSNSKGNSKASENQKLDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEDLFEKEVFPTCDSNATFQAMGISSELNNTNPYLQFNSPHQFVSYAGLEAGMNPIDMGLKRSISAPVSIPETFIDSSSFPQILPSTTWEGDFQNLYNMNFDQARATSFPPQTQFFTGLVEASNLKIEMQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04698 388 SMART finulus 193 243 IPR011598 GO:0046983
Vifa2g04698 388 MobiDBLite consensus disorder prediction 138 174 - -
Vifa2g04698 388 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 76 300 IPR024097 GO:0006355
Vifa2g04698 388 Gene3D - 184 258 IPR036638 GO:0046983
Vifa2g04698 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 237 IPR011598 GO:0046983
Vifa2g04698 388 Pfam Helix-loop-helix DNA-binding domain 191 238 IPR011598 GO:0046983
Vifa2g04698 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 256 IPR036638 GO:0046983
Vifa2g04698 388 FunFam Basic helix-loop-helix transcription factor 184 256 - -
Vifa2g04698 388 CDD bHLH_AtBPE_like 177 262 - -
Vifa2g04698 388 MobiDBLite consensus disorder prediction 134 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04698 Vifa-Chr2 1386468664 1386471546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04698 19 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 46.792 3.01e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g04698 HLH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04698 - - tpra:123899220 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04698 2 1386468664 1386471546 Vifa2g04698 2 1386468664 1386471546 ECH
Vifa2g04698 2 1386468664 1386471546 Vifa1g06897 1 1063105746 1063107158 ECH