Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04697 ATGGCGGAATCTGAGTACCGATGCTTTGTTGGTGGACTTGCCTGGGCCACCGATAACGACGCTCTCGGCAAAGCGTTTTCCACCTTTGGCGAAATCGTCGAATCGAAGGTTATCCATGATCGTGAAACCGGAAGATCGAGAGGATTTGGATTTGTTACGTTTGCATCGGAGCAATCGATGAAAGAGGCAATTGAAGGGATGAACGGTCAGGATCTGGATGGACGTAACATCACTGTGAACGAGGCGCAAAGCCGCGGCAGTGGAGGTGGTGGTGGTGGAGGTGGATACCGTGGAGGTGGTGGAGGATATGGAGGTGGAGGTGGTTATGGAGGTGGAGGCGGTGGAGGTTATAGCCGTGGTGGAGGAGGTGGTGGAGGTGGTTACGGAGGTGGTGGAGGTGGACGGGACCGTGGTTATGGAGACGGTGGATCTCGGTACTCGAGAGGAGGTGGTGGAGGTGGTTCCGAAGGAGACTGGAGGAGTTAA 486 0.5535 MAESEYRCFVGGLAWATDNDALGKAFSTFGEIVESKVIHDRETGRSRGFGFVTFASEQSMKEAIEGMNGQDLDGRNITVNEAQSRGSGGGGGGGGYRGGGGGYGGGGGYGGGGGGGYSRGGGGGGGGYGGGGGGRDRGYGDGGSRYSRGGGGGGSEGDWRS 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04697 161 SMART rrm1_1 7 80 IPR000504 GO:0003723
Vifa2g04697 161 SUPERFAMILY RNA-binding domain, RBD 4 116 IPR035979 GO:0003676
Vifa2g04697 161 MobiDBLite consensus disorder prediction 67 161 - -
Vifa2g04697 161 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 7 150 - -
Vifa2g04697 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Vifa2g04697 161 CDD RRM2_NsCP33_like 7 82 - -
Vifa2g04697 161 Gene3D - 1 110 IPR012677 -
Vifa2g04697 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04697 Vifa-Chr2 1385911063 1385911929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04697 8 86 Eukaryotic Initiation Factors Gene Family AT4G34110 36.709 1.51e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04697 - K13195 psom:113288647 148.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04697 2 1385911063 1385911929 Vifa2g04697 2 1385911063 1385911929 ECH