Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g04697 | ATGGCGGAATCTGAGTACCGATGCTTTGTTGGTGGACTTGCCTGGGCCACCGATAACGACGCTCTCGGCAAAGCGTTTTCCACCTTTGGCGAAATCGTCGAATCGAAGGTTATCCATGATCGTGAAACCGGAAGATCGAGAGGATTTGGATTTGTTACGTTTGCATCGGAGCAATCGATGAAAGAGGCAATTGAAGGGATGAACGGTCAGGATCTGGATGGACGTAACATCACTGTGAACGAGGCGCAAAGCCGCGGCAGTGGAGGTGGTGGTGGTGGAGGTGGATACCGTGGAGGTGGTGGAGGATATGGAGGTGGAGGTGGTTATGGAGGTGGAGGCGGTGGAGGTTATAGCCGTGGTGGAGGAGGTGGTGGAGGTGGTTACGGAGGTGGTGGAGGTGGACGGGACCGTGGTTATGGAGACGGTGGATCTCGGTACTCGAGAGGAGGTGGTGGAGGTGGTTCCGAAGGAGACTGGAGGAGTTAA | 486 | 0.5535 | MAESEYRCFVGGLAWATDNDALGKAFSTFGEIVESKVIHDRETGRSRGFGFVTFASEQSMKEAIEGMNGQDLDGRNITVNEAQSRGSGGGGGGGGYRGGGGGYGGGGGYGGGGGGGYSRGGGGGGGGYGGGGGGRDRGYGDGGSRYSRGGGGGGSEGDWRS | 161 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g04697 | 161 | SMART | rrm1_1 | 7 | 80 | IPR000504 | GO:0003723 | |
Vifa2g04697 | 161 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 116 | IPR035979 | GO:0003676 | |
Vifa2g04697 | 161 | MobiDBLite | consensus disorder prediction | 67 | 161 | - | - | |
Vifa2g04697 | 161 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 7 | 150 | - | - | |
Vifa2g04697 | 161 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 77 | IPR000504 | GO:0003723 | |
Vifa2g04697 | 161 | CDD | RRM2_NsCP33_like | 7 | 82 | - | - | |
Vifa2g04697 | 161 | Gene3D | - | 1 | 110 | IPR012677 | - | |
Vifa2g04697 | 161 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 84 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g04697 | Vifa-Chr2 | 1385911063 | 1385911929 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g04697 | 8 | 86 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.709 | 1.51e-07 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g04697 | - | K13195 | psom:113288647 | 148.288 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa2g04697 | 2 | 1385911063 | 1385911929 | Vifa2g04697 | 2 | 1385911063 | 1385911929 | ECH |