Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04696 ATGGTGGATCGTAGATTCATAGTTTGGTTTCTGCTATTGCTGTTGTTTCTGTGTTTTGAGGTAACATTGGAACAGATTGAGATTAAGCCATTGAGTTCACCTACAGAACGTGCAGCACTTCTTCAACTTCGAGCTTCTTTAGGTTTAAGAACCAAAGAATGGCCAAGAAAACCCGACCCTTGCTTAATCTGGATTGGTATTTCGTGTAACAATGGTCGTGTTGTTGGGATCAATATCTCGGGTTTTAGACGAACAAGAATTGGTAGAAGAAACCCTCAGTTTTCTGTTGATGCTTTGGTTAATTTCACCTTGTTGCAGTCTTTTAATGCCTCTGGTTTTTACCTACCTGGGGCTATTCCTGATTTGTTTGGGGTTAGTCTCGGTTCGCTTCGCGTGCTTGATCTCCGTTCTTGTTCAATTGGAAATGCTATTCCGAATTCTGTTGGGAATTTGACTAGGCTTACTGCTCTTTATCTTGCTGATAATAATCTTACTGGAATTGTTCCTGATAGTTTAGGTCAACTCTCGTCGCTTTCGGCTCTTGATCTCTCGGGGAATTCTCTTACGGGGATTATACCGGAGTCTTTTGGGTTTCTTGCGAATCTTTCTTCACTTGATTTGTCGGGGAATTTTTTCTCCGGGCCTGTTCCTTCGGGTTTAGGGAATCTTTCTAGGTTACAGTACTTGAACCTTTCTGGTAATAGCTTAAATTCATTGCCTGCACAATTGGGAGGTCTTGTTAGCTTGGTTGACCTTGATCTTAGTGAGAATTCTTTCTCCAGCGGTGTTTTTCCGGATTTGAGAGGGTCGGAGAACTTGCGGATTATTGTTCTGAGGAAAAATAATTTCACTGGTTCTTTGCCTGTTGAGTTGTGGTCATTGCCGAGACTGACGTTCGTAGATGTTTCTTCTAATAGCTTCAGTGGTTTGCTTCCGAATTCTAGTTCCTCTGTCGATTCTACTGTTGCGGTTCTAAATATATCGCATAACATGTTTTATGGAGGTCTTACACCTGTGCTTAGAAGGTTCAGTTTTGTTGATTTTGCAAACAATTATTATGAGGATAGGGGCCTCAGTTTTGATAATTTTGGACAACCGAATACGACAAAACCTGTAGAAGGTTCTGGGAAAAGTAATAAAACTAAGATTATATTGGCGGCAGTTTTGGGTGGACTTGGTTTACTTGCACTTTTGGCTTTGCTACTGGTACTGTTGCTTTTGTGCGCTCGTAAAAGGGGCAATTCAAGTCCAAGGGGAAATGGTGTGGGCCCTGCTCCTGCTGCAGGCAGTCCTCCGCCTCCCGGTGTATCGATAAACCTTGCAAATGTAGGAGACTCGTTTACGTATCATCAGTTGCTTCAGGCAACGGGAGATTTTAATGATGCAAATCTTATAAAACAAGGCCACACCGGGGATATCTTCAACGGTGTTTTGGAAAATGGGATTCCCGTTGTCATCAAAAGGATCGACATGCGATCTACGAAAAAGGATGCTTACCTATCGGAATTGGACTTTTTTAATAAGGTTTCTCATCCGCGATTTGTTCCCTTATTAGGTCACTGCTTAGAAAACGAGAACGAGAAGTTCCTGGTTTATAAACTTATGCCAAAAGGGGACTTGTCTAATTGCTTATTCTTCAAAAACACCACATCTGAAGATGGTACTTTGCAGTCATTGGACTGGATTACTAGATTAAAGATTGCTACTGGAGCCGCAGAGGCCATATCGTATCTGCATCATGATTGTATTCCACCTATTGTTCACAGAGATATTCAAGCGAGCAGTATACTTCTCGATGACAAGTATGAAGTTCGGTTAGGAAGTCTAAGTGAAGCCTGTACTCAAGAAGGTGATACCCATCAAAGTAAAATCACCCGGTTTCTGCGATTGCCTCAGTCCTCTGAACAAGGTGCATCTGGTTTACCAACATCTGTTTGTGCCTATGATGTTTATTGCTTTGGGAAAGTGTTACTTGAACTTGTGACTGGTAAGCTGGGTATTAGTGCATCAAGTGAGGGTGAATTGAAGGACTGGTTTGATCAGATTCTACCTTGCATTAGCATGTATGACAAGGAGCCCGTGACAAAAATCGTTGACCCATATCTAGTTGTGGACGAGGATTTCTTAGAAGAAGTGTGGGCAATATCCATTGTTGCCAGGTCTTGCCTAAACCCGAAACCTTCAAGACGACCCCCAATGAGATACGTTCTCAAGGCTTTGGAAAACCCTTTAAAAGTTGTAAGAGAAGAAAGTTCGAGTTCTGCGCGGCTTAAAGCAACCTCTTCTAGAGGCTCTTGGAACGCTACTTTGTTTGGTAGTTGGCGTCAGAGCTCGTCTGATGTAGCCACAAACCCTGCAGCTTCTGGTACAAAAATAGAAGGAGCAAGTAGTTTGAAGCTTTCAGCAACAAGTAGTTCATCCTCGCGGAGACGTCATTCAAATGAGATATGTCCCGAGCCATCATTTCGCTTACCTGATATAGAGAGGCTGGAGCATGAAGGAAGAGAGGCTTAA 2514 0.426 MVDRRFIVWFLLLLLFLCFEVTLEQIEIKPLSSPTERAALLQLRASLGLRTKEWPRKPDPCLIWIGISCNNGRVVGINISGFRRTRIGRRNPQFSVDALVNFTLLQSFNASGFYLPGAIPDLFGVSLGSLRVLDLRSCSIGNAIPNSVGNLTRLTALYLADNNLTGIVPDSLGQLSSLSALDLSGNSLTGIIPESFGFLANLSSLDLSGNFFSGPVPSGLGNLSRLQYLNLSGNSLNSLPAQLGGLVSLVDLDLSENSFSSGVFPDLRGSENLRIIVLRKNNFTGSLPVELWSLPRLTFVDVSSNSFSGLLPNSSSSVDSTVAVLNISHNMFYGGLTPVLRRFSFVDFANNYYEDRGLSFDNFGQPNTTKPVEGSGKSNKTKIILAAVLGGLGLLALLALLLVLLLLCARKRGNSSPRGNGVGPAPAAGSPPPPGVSINLANVGDSFTYHQLLQATGDFNDANLIKQGHTGDIFNGVLENGIPVVIKRIDMRSTKKDAYLSELDFFNKVSHPRFVPLLGHCLENENEKFLVYKLMPKGDLSNCLFFKNTTSEDGTLQSLDWITRLKIATGAAEAISYLHHDCIPPIVHRDIQASSILLDDKYEVRLGSLSEACTQEGDTHQSKITRFLRLPQSSEQGASGLPTSVCAYDVYCFGKVLLELVTGKLGISASSEGELKDWFDQILPCISMYDKEPVTKIVDPYLVVDEDFLEEVWAISIVARSCLNPKPSRRPPMRYVLKALENPLKVVREESSSSARLKATSSRGSWNATLFGSWRQSSSDVATNPAASGTKIEGASSLKLSATSSSSSRRRHSNEICPEPSFRLPDIERLEHEGREA 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04696 837 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515
Vifa2g04696 837 MobiDBLite consensus disorder prediction 779 811 - -
Vifa2g04696 837 SUPERFAMILY L domain-like 99 338 - -
Vifa2g04696 837 Gene3D Transferase(Phosphotransferase) domain 1 535 763 - -
Vifa2g04696 837 FunFam Leucine-rich repeat receptor protein kinase EMS1 193 290 - -
Vifa2g04696 837 Pfam Protein tyrosine and serine/threonine kinase 465 737 IPR001245 GO:0004672|GO:0006468
Vifa2g04696 837 ProSiteProfiles Leucine-rich repeat profile. 225 247 IPR001611 GO:0005515
Vifa2g04696 837 MobiDBLite consensus disorder prediction 812 837 - -
Vifa2g04696 837 Pfam Leucine rich repeat 153 210 IPR001611 GO:0005515
Vifa2g04696 837 Pfam Leucine rich repeat 221 258 IPR001611 GO:0005515
Vifa2g04696 837 FunFam Predicted protein 429 534 - -
Vifa2g04696 837 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 383 765 - -
Vifa2g04696 837 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Vifa2g04696 837 Gene3D Phosphorylase Kinase; domain 1 437 533 - -
Vifa2g04696 837 MobiDBLite consensus disorder prediction 415 434 - -
Vifa2g04696 837 SUPERFAMILY Protein kinase-like (PK-like) 439 740 IPR011009 -
Vifa2g04696 837 SMART LRR_typ_2 151 174 IPR003591 -
Vifa2g04696 837 SMART LRR_typ_2 175 198 IPR003591 -
Vifa2g04696 837 SMART LRR_typ_2 223 246 IPR003591 -
Vifa2g04696 837 SMART LRR_typ_2 127 150 IPR003591 -
Vifa2g04696 837 SMART LRR_typ_2 294 317 IPR003591 -
Vifa2g04696 837 SMART LRR_typ_2 199 222 IPR003591 -
Vifa2g04696 837 Gene3D Ribonuclease Inhibitor 33 195 IPR032675 -
Vifa2g04696 837 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 33 192 - -
Vifa2g04696 837 MobiDBLite consensus disorder prediction 779 837 - -
Vifa2g04696 837 FunFam Putative LRR receptor-like serine/threonine-protein kinase 535 760 - -
Vifa2g04696 837 Gene3D Ribonuclease Inhibitor 196 370 IPR032675 -
Vifa2g04696 837 PRINTS Leucine-rich repeat signature 178 191 - -
Vifa2g04696 837 PRINTS Leucine-rich repeat signature 223 236 - -
Vifa2g04696 837 ProSiteProfiles Protein kinase domain profile. 459 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04696 Vifa-Chr2 1384967404 1384971698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04696 35 632 Miscellaneous Gene Families AT2G16250 52.553 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vifa2g04696 PK_Tyr_Ser-Thr 2.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04696 - - gmx:100805769 1152.89