Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04695 ATGGCAACTTCCGGCGGTGGCGGTTCCTCGCCGTTGCTAACCAACCGTACCTCTATCGCCGGTATCAAACTCTACGTCTTAATCCTCATTTTCCTCGCGATCGTGATCGCGGTTACAATTACTCTCGTCACCATTTTCTGCATTCGCCGGAACCGAAGCTCGAAGAAGAGCGAAATGCGAGTGAAAGTGAAGCATAGCTCCGGCACAATTCCGCTCTTTTCTAAGGAGATCGTAGAGGTGAATCAGGTGGTCAAGATCGAACATGCTATTGTTGATGATTTGAAGTTGCAGACGCAAGTGGAGTGTGAGATCGAAGAGAGTTGTAGTGTGTCGGTGGAGTCTCCGTCTCCGTCATCTTCGTCGGAGAATATAGGTTGGGGTCGGTGGTATAGTTTGAAGGAATTGGAGAATGCTACCGATAGATTTTCTGAAGGGAACGTGATCGGAGAAGGAGGTTATGGAATTGTTTACAGAGGAATTCTTCAAGACGGTTCCGTGGTTGCTGTGAAGAATCTTCTTAACAATAAGGGTCAAGCTGAGAAAGAGTTTAAGGTGGAGGTTGAAGCAATTGGAAAAGTGAGGCATAAGAATTTGGTTGGGTTAGTTGGATATTGTGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATATGTCGACAATGGAAATTTAGAGCAGTGGCTGCATGGTGATGTAGGACCTGTTAGCCCCTTGAGTTGGGATGTAAGAATGATGATTGCAGTTGGCACTGCAAAAGGGCTAGCCTATTTGCACGAAGGCTTAGAACCCAAAGTTGTCCACCGAGACGTAAAATCCAGCAATATTCTTTTGGACAAAAAATGGAATGCCAGAGTATCAGATTTTGGACTCGCCAAGCTCTTAGGGTCTGGCAAAAGCTATGTGACAACCCGTGTAATGGGAACATTTGGATATGTTTCACCCGAGTATGCAAGCACGGGAATGCTTAATGAAAGCAGTGATGTGTATAGTTTTGGGATTCTGCTCATGGAGCTAGTTACAGGAAGAAGTCCCATTGATTATTCTAGACCACCCGCTGAGATGAACTTGGTTGATTGGTTTAAGGGAATGGTAGCAAGTCGTCGTGGGGATGAGCTACTTGATCCTTTAATTGAGATTCAACCCTCTCCAAGATCATTGAAGCGTGCTTTACTTGTTTGTCTGCGTTGCATAGATTTGGATGCCAATAAACGACCAAAGATGGGTCAAATTGTTCATATGCTCGAGGCAGATGATTTTCCTTTTCGTTCTGATCTTCGAACTAGAGAGAAAGATTATGTTCCCTCTCAGGCAGACGAATCCAAAAAGGTTCTGTATCAAACAAGGCATGTGGAGCCCGTATATAAAGCGAGCTGGAGATGA 1377 0.4488 MATSGGGGSSPLLTNRTSIAGIKLYVLILIFLAIVIAVTITLVTIFCIRRNRSSKKSEMRVKVKHSSGTIPLFSKEIVEVNQVVKIEHAIVDDLKLQTQVECEIEESCSVSVESPSPSSSSENIGWGRWYSLKELENATDRFSEGNVIGEGGYGIVYRGILQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAQRMLVYEYVDNGNLEQWLHGDVGPVSPLSWDVRMMIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNARVSDFGLAKLLGSGKSYVTTRVMGTFGYVSPEYASTGMLNESSDVYSFGILLMELVTGRSPIDYSRPPAEMNLVDWFKGMVASRRGDELLDPLIEIQPSPRSLKRALLVCLRCIDLDANKRPKMGQIVHMLEADDFPFRSDLRTREKDYVPSQADESKKVLYQTRHVEPVYKASWR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04695 458 ProSitePatterns Protein kinases ATP-binding region signature. 148 170 IPR017441 GO:0005524
Vifa2g04695 458 ProSiteProfiles Protein kinase domain profile. 142 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04695 458 Gene3D Phosphorylase Kinase; domain 1 110 217 - -
Vifa2g04695 458 SUPERFAMILY Protein kinase-like (PK-like) 116 414 IPR011009 -
Vifa2g04695 458 SMART serkin_6 142 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04695 458 FunFam Probable serine/threonine-protein kinase At1g01540 122 217 - -
Vifa2g04695 458 CDD STKc_IRAK 148 414 - -
Vifa2g04695 458 Gene3D Transferase(Phosphotransferase) domain 1 218 426 - -
Vifa2g04695 458 FunFam Putative receptor-like serine/threonine-protein kinase 218 428 - -
Vifa2g04695 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Vifa2g04695 458 Pfam Protein kinase domain 143 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04695 458 PANTHER OS01G0323000 PROTEIN 13 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04695 Vifa-Chr2 1384205772 1384208845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04695 115 414 Receptor kinase-like Gene Family AT4G02010 47.039 1.68e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vifa2g04695 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04695 - - gmx:100779420 672.93