Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04678 ATGGCTGATGCCAATTCTCCAACAACATCTCCACCGTCTGATTCATCACAATCCCCGCCACCTCCCTCACCGGACACCGCGAATAATTCATCACCACCACCACCACCAGCCGCTGATAATTCATCTCCACCACCATCCTCTCCACCACCATCATCACCTCCGCCATCATCACCTCCACCATCATCTCCACCTCCATCTTCGCCTCCTCCATCATCTCCTTCTCCACCTCCACCTTCTGGCTCTTCCCCGTCTCCACCATCACCGCCTCCACCACCGTCACCAGAAGGCCGCACACCATCGCCTCCAAACCGGCAAGACTTTTCTTCTCCTCCGCCACCACATCATCGTTTGTCACCACCGAAATCACCTCACTCGAATAATCACCATAATTCAAATGATAAGAATGGGAACCAGTTGAACACAGGGGCTATTATAGGAATTGCAAGTGGAGCTGGTTTATTGCTCCTTGTCCTTTCCATACTACTCATTGTATGTTCAAGAAAAAAGAAGAGATCACAACCTCACCATCAATTCTACCCCCCTCAACCCCGCGGTCCTAATCAATATGAGTACAATAACCGTGATCACATACTTAATATTCCTCCAACACCAGATGGTGGTGGAGGTTGGGGTCCACCACCACCTCGACAATTTAGCAGTGACATGAGTACCTCGAGTTACTCAGGGTCGCAAGGTCCTGTATTTCCACCACCACATCCAACAGTTGCGCTCGGGTTCAATCAGAGTTCATTCACATATGATGAGTTATCCATTGCTACGGGTGCGTTTGCACAGCAAAATCTGTTGGGTCAAGGTGGATTTGGATATGTACATAAAGGTGTTCTTCCTAATGGTAAAGAAATAGCAGTGAAGAGCCTAAAAGCAACCAGTGGACAAGGTGATAGAGAATTCCAAGCTGAAGTCGAAACTATCAGCCGTGTCCACCATCGCTATCTCGTTTCGCTTGTTGGATATTGCATTTCTGATGCCAAAAGGCTTCTTGTTTATGAATTTGTTCCTAACAAGACCCTTGAATATCATCTTCATGGAAAGGGTCGACCTGTGATGGACTGGGGCACAAGGCTTAAAATCGCCCTTGGATCAGCTAAAGGACTTGCTTATTTACATGAGGATTGTCATCCTCGTATCATTCACCGAGATATAAAGGGTGCAAACATTTTACTTGAAAACAACTTTGAAGCAAAAGTGGCAGATTTTGGATTGGCAAAGTTTAATCAAGACGCTAACACTCATGTTTCTACTCGCGTCATGGGAACATTTGGGTATATGGCTCCTGAGTATGCATCGAGCGGTAAGCTAAGTGATAAATCGGATGTCTTCTCATACGGTATTATGCTTTTGGAGCTAATAACTGGACGACGACCGGTTGGAACGACTGGTGATGACGAAGAAGATAGTTTGGTTGATTGGGCTAGACCACTTTGTACAAAAGCATTAGAAAATGGAATACTTAATGGATTGGTCGACATACGATTAGAGGACAATTATGACAAAAATGAAATAACACGAATGATAGCTTGTGCTGCTGCCAGTGTTAGGCATTCATCAAAAAGGCGTCCAAAAATGAGTCAGATTGTAAGAGTACTGGAGGGAGATTCTTCACTCGAAGCGCTTCATCAGGATGGAGTCAAAGCTGGACATAGTACTATGTACAGCAGCGCAAGTGGAGATTATGATGCAGGAGCATACAGTGCTGACATGAAAAAGTTCAAGAAAGTAGCATTTGAAAGCGGCGTAGCAAGCAGCGAGTATGGTGGGACTAGTGAGTATGGTCTCAATCTTTCGGTCTCAAGCAGTGAACAATCATCTTCTGATTATAGCAGGAGGACAGCAACAGGAACAGGAAGCCGGATCAACACTCCGTGA 1887 0.4568 MADANSPTTSPPSDSSQSPPPPSPDTANNSSPPPPPAADNSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSPSPPPPSGSSPSPPSPPPPPSPEGRTPSPPNRQDFSSPPPPHHRLSPPKSPHSNNHHNSNDKNGNQLNTGAIIGIASGAGLLLLVLSILLIVCSRKKKRSQPHHQFYPPQPRGPNQYEYNNRDHILNIPPTPDGGGGWGPPPPRQFSSDMSTSSYSGSQGPVFPPPHPTVALGFNQSSFTYDELSIATGAFAQQNLLGQGGFGYVHKGVLPNGKEIAVKSLKATSGQGDREFQAEVETISRVHHRYLVSLVGYCISDAKRLLVYEFVPNKTLEYHLHGKGRPVMDWGTRLKIALGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVADFGLAKFNQDANTHVSTRVMGTFGYMAPEYASSGKLSDKSDVFSYGIMLLELITGRRPVGTTGDDEEDSLVDWARPLCTKALENGILNGLVDIRLEDNYDKNEITRMIACAAASVRHSSKRRPKMSQIVRVLEGDSSLEALHQDGVKAGHSTMYSSASGDYDAGAYSADMKKFKKVAFESGVASSEYGGTSEYGLNLSVSSSEQSSSDYSRRTATGTGSRINTP 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04678 628 Gene3D Phosphorylase Kinase; domain 1 240 338 - -
Vifa2g04678 628 SUPERFAMILY Protein kinase-like (PK-like) 243 536 IPR011009 -
Vifa2g04678 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 383 395 IPR008271 GO:0004672|GO:0006468
Vifa2g04678 628 MobiDBLite consensus disorder prediction 123 137 - -
Vifa2g04678 628 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 150 589 IPR047117 -
Vifa2g04678 628 Pfam Protein tyrosine and serine/threonine kinase 266 474 IPR001245 GO:0004672|GO:0006468
Vifa2g04678 628 Gene3D Transferase(Phosphotransferase) domain 1 339 554 - -
Vifa2g04678 628 MobiDBLite consensus disorder prediction 13 119 - -
Vifa2g04678 628 ProSitePatterns Protein kinases ATP-binding region signature. 269 291 IPR017441 GO:0005524
Vifa2g04678 628 MobiDBLite consensus disorder prediction 589 628 - -
Vifa2g04678 628 MobiDBLite consensus disorder prediction 202 233 - -
Vifa2g04678 628 FunFam proline-rich receptor-like protein kinase PERK1 241 338 - -
Vifa2g04678 628 MobiDBLite consensus disorder prediction 1 137 - -
Vifa2g04678 628 FunFam Proline-rich receptor-like protein kinase PERK1 339 547 - -
Vifa2g04678 628 ProSiteProfiles Protein kinase domain profile. 263 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04678 628 SMART serkin_6 263 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04678 628 MobiDBLite consensus disorder prediction 217 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04678 Vifa-Chr2 1379829469 1379832145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04678 131 615 Trihelix Transcription Factor Family AT1G70460 50.307 4.22e-157 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa2g04678 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04678 - - psat:127085055 871.692