Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04677 ATGTTTCGAGATGGCAAAAAGGCTGGCTTTAATGCTCTTCAGTTTGCCAGAAAAAAGTATAAAGTATCATGTGGGGTTGGCGGTATCAATCGTGATTTGGTGTGGGGTTATATGGATGTGCAGACACGCCTTCCAGCACCTATCTGTCCATATTATGCAGAGTTTATTGGGAGAGAGATTTTGAAGAAGGATGGTTTTATGGTGAAGGCAGGTTGGCCAACAACAGATGAGCTTCAGTCAGTTGTTAGACATGTGAAGAGGGATGTGAAACGGGCTACTTCGAGAATTTTTAATGAAGGTGAACATGGTCATTCCAAGGTCAAGGAAAGGCAAAGGATATTGTTACTAGCGTCTAATTTGCTTGGAAAGCATAATAATGAGCTTGCAACACTTGAGACTTGGGATAATGGGAAGCCATATGAACAAGTTGATGAGATTGAAGTGCCAATGTTGACCCGCTTAATTATGTACTATGCTGGTTGGGCAGATAAGATTCATGGACTCACAGTTCCAGCGGATGGACCACATCAGATGCATTCATTGCATGAACTAATTGGTGTTGCTGCAAAAATATTTCACGGGGCTGGACTTCCTTCGGGTGTTTTGAATGTAGTGTCTGGTTTTGGTCCAACAGCCGGTGCCGCTCTAGCTAGTCATATGGATGTGGATAAGATTGCTTTTACAGGTTCAACTGCTACTGGAAAAATTATCCTTGAACTAGCTGCTAAAAGAAATTTGAAGGCTGCAACTTTGGAGCTTGGTGGAAAATCTCCCTTTATTGTATGTGAAGATGCTGATGTAGATCAGGCTGTTGAGTTGGCACACTTCGCCTTGTTCTTCGACTAG 846 0.4267 MFRDGKKAGFNALQFARKKYKVSCGVGGINRDLVWGYMDVQTRLPAPICPYYAEFIGREILKKDGFMVKAGWPTTDELQSVVRHVKRDVKRATSRIFNEGEHGHSKVKERQRILLLASNLLGKHNNELATLETWDNGKPYEQVDEIEVPMLTRLIMYYAGWADKIHGLTVPADGPHQMHSLHELIGVAAKIFHGAGLPSGVLNVVSGFGPTAGAALASHMDVDKIAFTGSTATGKIILELAAKRNLKAATLELGGKSPFIVCEDADVDQAVELAHFALFFD 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04677 281 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 189 281 IPR016162 GO:0016491
Vifa2g04677 281 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 72 191 - -
Vifa2g04677 281 SUPERFAMILY ALDH-like 49 281 IPR016161 GO:0016491
Vifa2g04677 281 Pfam Aldehyde dehydrogenase family 188 280 IPR015590 GO:0016491
Vifa2g04677 281 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 72 188 IPR016162 GO:0016491
Vifa2g04677 281 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 251 258 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04677 Vifa-Chr2 1379234489 1379235459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04677 88 281 Aldehyde Dehydrogenase Gene Family AT1G23800 57.322 3.76e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04677 K00128 - gmx:100777399 280.411