Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04667 ATGGAATTGAGAGGGCTCTCACTCTCAGAGCTAAGTATAGCAAAGCTAGATGACTCGGATGGAGAGCGGTCGTACTGTGACAACTGCAAGACGTCAATATTTGCCCTCCACAAACACTGTCAGACATGCAAATCTGACTGTTGTCTCGCCTGTTGTCGTGACTTTTGTGATGCGCAGCTTCGAGGTGGTGCTGATCCGATTGAGTCACATGTTACTGCCAAGTTTGGGGTTCACAAACGGCCAAGATCTAATTGGGATGTGGATAGTGATGACATGGTTTTCTGTGAAGGGGTTCTTGAACTGAGAAGCTTCTATCCTCCAAATCACATTACTGATTTGCTAGATGAAGCAGAAAAACTTGTAGACAAACACAAGCATCACAAGCCTATGATTGCAGACGAGACTTATAAGAACTTGCATTCATGTTTGAATCGTAAGGCAGCATCTCGTGAAGGGTCAAATGACAACAATATATATTGCCCGGAGGCTAAAATTGCATATCCTGAGGATTTACTACAATTTCAATGGCACTGGAGAAAAGGGGAGCCAGTAATTGTCAGGAACCTGCTTGGAGGTGGTACATTTAGTTCATTATTATGGGAACCATCACACATGAGCCATGCAATCAGTCAGAAGCATGAGACTGTGAAGGCCATTAATTGCTTAAGTTTGTGCGAGGAAGAAGTTACAATCAACCAGTTCTTTACTGAGTACGCTAATGATTGCATGCATTCAAGTAAACAGCCTCACATGTTGAAGTTGAAAGATTGGCCTCCTTCTGAATCATTTAAGGAATGTTTACCTATTCATTTTAAGAACTTCGTATCTTACTTGCCGTATAAAGAATACACACATCCTGTAAGTGGTTCTCTTAACCTTGCCGTGAAGTTGCCTGATGGTTGTCTGAAGCCAGACATGGGGCCAAAAGCATACATTGCTTATGGAGTTGCTAAGGAGCTTGGGCGCGGTGATTCTGTGACAAAGCTCCATTGTGACATGTCTGATGCAGTAAACGTGTTGACTCATGTTGCTAAAGTGAAATTGGGTTCTGAGAATGTTACTGCCATTGAGAAATTGATGCCAAAGAACCTTGAGCAAGACAAGAGGGAATTACATGATATTCATCAGGATGGGGAGGCTAATGATGATGGCACATCTGGGTCTAAGCTCAAAGAAGTTGAAAAAGGTACAGTGGAGCAAGGAGATAGTTTGTTGGATGCAGTGGATTCTTTGGATGGTGCTCTCTGGGATATTTTTCGAAGAAAGGATGTACCTATATTGGAGGGATATTTATACAAGCATTTCGGAGAGTTTAGTCATTTTGACTGCCATCCTTTAATGAAGGTTACTCACCCCATCCATGATCAGACATTTTATCTGACTATGGAGCATAAGAAGAAGCTTAAGCAGGAGTGTGGAATTGAGCCCTGGACCTTCACTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCATCAAGTCAGAAATCTGAACTCATGCACCAAGGTTGCACTTGATTTTGTCTCACCTGAAAATGTGAAGAAAATGATTATACATGCTGTGGACGATGCAGTCAAAAAGTTGAAAAACTCGACATGTGCTAGCGGAAAACAAGAAGCAATTATTTTGCCTAATTAG 1647 0.4214 MELRGLSLSELSIAKLDDSDGERSYCDNCKTSIFALHKHCQTCKSDCCLACCRDFCDAQLRGGADPIESHVTAKFGVHKRPRSNWDVDSDDMVFCEGVLELRSFYPPNHITDLLDEAEKLVDKHKHHKPMIADETYKNLHSCLNRKAASREGSNDNNIYCPEAKIAYPEDLLQFQWHWRKGEPVIVRNLLGGGTFSSLLWEPSHMSHAISQKHETVKAINCLSLCEEEVTINQFFTEYANDCMHSSKQPHMLKLKDWPPSESFKECLPIHFKNFVSYLPYKEYTHPVSGSLNLAVKLPDGCLKPDMGPKAYIAYGVAKELGRGDSVTKLHCDMSDAVNVLTHVAKVKLGSENVTAIEKLMPKNLEQDKRELHDIHQDGEANDDGTSGSKLKEVEKGTVEQGDSLLDAVDSLDGALWDIFRRKDVPILEGYLYKHFGEFSHFDCHPLMKVTHPIHDQTFYLTMEHKKKLKQECGIEPWTFTQKLGDAVFIPAGCPHQVRNLNSCTKVALDFVSPENVKKMIIHAVDDAVKKLKNSTCASGKQEAIILPN 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04667 548 ProSiteProfiles JmjC domain profile. 286 527 IPR003347 -
Vifa2g04667 548 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3 520 IPR045109 GO:0032454|GO:0033169
Vifa2g04667 548 SMART cupin_9 267 526 IPR003347 -
Vifa2g04667 548 SUPERFAMILY Clavaminate synthase-like 161 525 - -
Vifa2g04667 548 Gene3D Cupin 156 534 - -
Vifa2g04667 548 Pfam JmjC domain, hydroxylase 415 510 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04667 Vifa-Chr2 1377332631 1377337007 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa2g04667 JmjC 1.6e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04667 K15601 - vvi:100261347 503.442