Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04646 ATGTCTAACCATGATGAAGAGAGAAACCACGAGCTCCATCCATTCACGACACCACAATTGCAATTAAACACATCAAACACTAATACCACCACACAAAACCACCATCCCACACCATCCTCCACCATCGCTCGCCGCCCACGGGGGCGTCCCCCTGGCTCCAAGAACATGCCTAAAATTCCTGCCATGGTAACACATGACATTCCTAATGCACTAACTTCTCATGCTCTTGAGATCACAACTGGTGCCGATGTTTTAAAGAGTCTCTTTGATTACACTCGTCGTAAAGGGAAGGGTATCTACATCCATGGTGGAAATGGAGTGGTGAGGTATATAAGGCTACGTCAACCAACGGGGAAAGTTTTAACTCTCAAGGGAAGGATACAAATTCATTCAATATCTGGTATGATTTTCCCGCCCCCAACATCAAGGGCTGCTGGAGGATTGACAGTTTACTTATCAGGACCAAAGGGACATATGATTGGGGGGACCGTGATGTCCCCTATGGTGGCGTCAAATTCAATAACTTTGATGGCTTTTTCTTTTGCAAACATCACATATGAAAACATTTCTTCGGTGGCATAA 582 0.4519 MSNHDEERNHELHPFTTPQLQLNTSNTNTTTQNHHPTPSSTIARRPRGRPPGSKNMPKIPAMVTHDIPNALTSHALEITTGADVLKSLFDYTRRKGKGIYIHGGNGVVRYIRLRQPTGKVLTLKGRIQIHSISGMIFPPPTSRAAGGLTVYLSGPKGHMIGGTVMSPMVASNSITLMAFSFANITYENISSVA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04646 193 MobiDBLite consensus disorder prediction 1 58 - -
Vifa2g04646 193 ProSiteProfiles PPC domain profile profile. 68 193 IPR005175 -
Vifa2g04646 193 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 188 - -
Vifa2g04646 193 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 182 IPR005175 -
Vifa2g04646 193 Gene3D - 72 191 - -
Vifa2g04646 193 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 189 IPR014476 GO:0003680
Vifa2g04646 193 PIRSF ESCAROLA 1 190 IPR014476 GO:0003680
Vifa2g04646 193 MobiDBLite consensus disorder prediction 14 40 - -
Vifa2g04646 193 CDD DUF296 72 171 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04646 Vifa-Chr2 1370298061 1370298642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04646 36 189 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 47.879 7.42e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04646 - - psat:127078493 279.256